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perinatal_modeling.qmd has spline regression code to understand how gene expression changes in different cell types from newborn mice to 1 month old mice. (See first example image below.)
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T-ALL_flowSOM_clustering.py has some code to cluster flow cytometry data. I actually wrote this script for an undergraduate to use. (See second example image below.)
Example spline regression of gene expression across time points for mouse CD8 single-positive T cells
Minimal spanning tree of preliminary flow cytometry data generated with T-ALL_flowSOM_clustering.py
