Moved the test data around.

Removed cli dependency from the NCA module.
john-harrold · Nov 27, 2023 · 0570316 · 0570316
1 parent d3188e4
commit 0570316
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Showing 48 changed files with 119 additions and 91 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -33,7 +33,6 @@ Imports:
   utils,
   yaml
 Suggests:
-  cli,
   clipr,
   gridExtra,
   knitr,

diff --git a/NEWS.md b/NEWS.md
@@ -4,6 +4,7 @@
 - Fixed bug in NCA module where column details didn't update properly when switching between analyses. 
 - Fixed bug where detecting dosing from rows left the dosing records in the data frame for subsequent NCA.
 - Fixed bug where the same parameter(s) were added over the same interval resulting in [[numeric]] in the reported values. Now if the same time interval is added more than once subsequent additions will update the parameters of the interval.
+- Fixed stand-alone code generation and copy clipboard. 
 
 # ruminate 0.1.1
 - Initial release
diff --git a/R/NCA_Server.R b/R/NCA_Server.R
@@ -4917,7 +4917,7 @@ NCA_fetch_np_meta = function(
       if(system.file(package="cli")==""){
         message(msg)
       } else {
-        cli::cli_alert_danger(msg)
+        FM_message(msg, entry_type="danger")
       }
     }
   }

diff --git a/README.Rmd b/README.Rmd
@@ -41,7 +41,16 @@ You can point your web browser to [runrumiate.ubiquity.tools](https://runruminat
 You can install the released version of ``rumiante`` from [CRAN](https://cran.r-project.org/package=ruminate) with:
 
 ``` r
-install.packages("ruminate",  dependencies=TRUE)
+# Dependencies:
+install.packages("clipr")
+install.packages("gridExtra")
+install.packages("prompter")
+install.packages("readxl")
+install.packages("shinydashboard")
+install.packages("ubiquity")
+
+# Actual package
+install.packages("ruminate")
 ```
 
 ## Development version

diff --git a/README.md b/README.md
@@ -41,7 +41,16 @@ You can install the released version of `rumiante` from
 [CRAN](https://cran.r-project.org/package=ruminate) with:
 
 ``` r
-install.packages("ruminate",  dependencies=TRUE)
+# Dependencies:
+install.packages("clipr")
+install.packages("gridExtra")
+install.packages("prompter")
+install.packages("readxl")
+install.packages("shinydashboard")
+install.packages("ubiquity")
+
+# Actual package
+install.packages("ruminate")
 ```
 
 ## Development version

diff --git a/docs/articles/noncompartmental_analysis.html b/docs/articles/noncompartmental_analysis.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -5,5 +5,5 @@ articles:
   deployment: deployment.html
   model_builder: model_builder.html
   noncompartmental_analysis: noncompartmental_analysis.html
-last_built: 2023-11-26T22:54Z
+last_built: 2023-11-26T23:15Z
 
diff --git a/docs/reference/MB_build_code.html b/docs/reference/MB_build_code.html
diff --git a/docs/reference/MB_del_current_element.html b/docs/reference/MB_del_current_element.html
diff --git a/docs/reference/MB_fetch_catalog.html b/docs/reference/MB_fetch_catalog.html
diff --git a/docs/reference/MB_fetch_code.html b/docs/reference/MB_fetch_code.html
-Original file line number
+Diff line change
@@ Expand Up / @@ -33,7 +33,6 @@ Imports: @@
       utils,
       yaml
     Suggests:
-      cli,
       clipr,
       gridExtra,
       knitr,
@@ Expand Down @@