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refactor(lib): re-organize graph utils #237

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Job	Run time
python-benchmark	1m 45s
cargo-test (macos-latest, 3.9)	1m 30s
cargo-test (macos-latest, 3.10)	1m 29s
pytest (macos-latest, 3.9)	2m 52s
cargo-test (macos-latest, 3.11)	1m 59s
pytest (macos-latest, 3.10)	2m 53s
cargo-test (macos-latest, 3.12)	2m 13s
pytest (macos-latest, 3.11)	3m 54s
cargo-test (ubuntu-latest, 3.9)	47s
cargo-test (ubuntu-latest, 3.10)	50s
pytest (macos-latest, 3.12)	2m 58s
pytest (ubuntu-latest, 3.9)	1m 52s
pytest (ubuntu-latest, 3.10)	1m 25s
cargo-test (ubuntu-latest, 3.11)	45s
cargo-test (ubuntu-latest, 3.12)	49s
pytest (ubuntu-latest, 3.11)	1m 30s
cargo-test (windows-latest, 3.9)	1m 28s
pytest (ubuntu-latest, 3.12)	1m 38s
cargo-test (windows-latest, 3.10)	1m 55s
pytest (windows-latest, 3.9)	2m 34s
cargo-test (windows-latest, 3.11)	2m 13s
pytest (windows-latest, 3.10)	2m 42s
cargo-test (windows-latest, 3.12)	2m 15s
pytest (windows-latest, 3.11)	2m 52s
pytest (windows-latest, 3.12)	2m 38s
rust-benchmark	1m 15s
	51m 1s