-
Notifications
You must be signed in to change notification settings - Fork 5
Example code to estimate force of infection from age-stratified incidence data, as described in "Opportunities for improved surveillance and control of infectious diseases from age-specific case data: insight from dengue".
License
isabelrodbar/dengue_foi
Folders and files
| Name | Name | Last commit message | Last commit date | |
|---|---|---|---|---|
Repository files navigation
This repository includes example code to estimate forces of infection for dengue as described in "Opportunities for improved surveillance and control of infectious diseases from age-specific case data: insight from dengue " The data folder contains example data from Brazil. "dhf_brazil_2002_2015.Rdata": Age-specific counts for Brazil 2002:2015 "census_brazil_2002_2015.Rdata" Census projections for Braizl 2002:2015 The code folder contains example code and functions required to fit the model "Example_code.R": Code to run an example and estimate forces of infection from the data "ll.1_pois.R": Likelihood function to produce estimates (maximum likelihood optimization" "stan_code1.stan" Stan code "figure_plot_stan_output.R" Function to plot stan model outputs
About
Example code to estimate force of infection from age-stratified incidence data, as described in "Opportunities for improved surveillance and control of infectious diseases from age-specific case data: insight from dengue".
Resources
License
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published