Use `pak` instead of `remotes` #152

	---
	name: Staged dependencies action test

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main

	jobs:
	smoke-test:
	runs-on: ubuntu-latest
	name: ${{ matrix.image }}, version ${{ matrix.tag }}
	container:
	image: ${{ matrix.image }}:${{ matrix.tag }}
	strategy:
	fail-fast: false
	matrix:
	image: ["rocker/verse"]
	tag: ["4.2.1", "4.1.3", "4.0.3"]
	steps:
	- name: Checkout repo
	uses: actions/checkout@v3

	- name: Checkout test repo
	uses: actions/checkout@v3
	with:
	repository: "openpharma/stageddeps.elecinfra"
	path: stageddeps.elecinfra

	- name: Test staged dependencies for elecinfra
	uses: ./
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	with:
	run-system-dependencies: true
	path: stageddeps.elecinfra

	- name: Install BiocManager
	run: \|
	options(repos = c(CRAN = "https://cloud.r-project.org/"))
	ncores <- parallel::detectCores(all.tests = FALSE, logical = TRUE)
	cat(paste("\n\nnumber of cores detected:", ncores, "\n\n"))
	if (!require("BiocManager")) install.packages("BiocManager", upgrade = "never", Ncpus = ncores)
	shell: Rscript {0}

	- name: Test staged dependencies with more parameters
	uses: ./
	with:
	path: stageddeps.elecinfra
	version: v0.3.1
	enable-bioc-repos: true
	enable-check: false
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

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