olefile for ImageJ / Jython ☕ 🐍 🔬

A mavenized package of Philippe Lagadec's olefile Python module to be used in ImageJ.

Example Usage

The code snippet below demonstrates how to read an Olympus .oib image file using olefile and print some of the contained metadata.

import olefile
import codecs

ole = olefile.OleFileIO('/data/fluoview/oib/Slide1sec001/Slide1sec001_01.oib')

stream = ole.openstream(['OibInfo.txt'])
conv = codecs.decode(stream.read(), 'utf16')
print conv

stream = ole.openstream(['Storage00001', 'Stream00060'])
conv = codecs.decode(stream.read(), 'utf16')
print conv

Packaging

The pom.xml is based on the imagej-jython-package repository from Michael Entrup with adaptations to make it work with the original structure of the upstream olefile package.