Merge branch 'release/2.5.9' #266
Workflow file for this run
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| on: [push, pull_request] | |
| name: test-coverage | |
| jobs: | |
| test-coverage: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: windows-latest, r: "4.2" } | |
| - { | |
| os: ubuntu-20.04, | |
| r: "4.1", | |
| rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", | |
| } | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }}-${{ matrix.config.os }}-${{ matrix.config.r }} | |
| cancel-in-progress: true | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ matrix.config.os }}-r-${{ matrix.config.r }}-3-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ matrix.config.os }}-r-${{ matrix.config.r }}-3- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| env: | |
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
| run: | | |
| sudo apt install libgtk2.0-dev xorg-dev libxml2-dev libnlopt-dev libcurl4-openssl-dev libudunits2-dev libcgal-dev libglu1-mesa-dev libgdal-dev | |
| - name: Install RGtk2 | |
| if: runner.os == 'Windows' | |
| run: ./.github/install_gtk.cmd | |
| shell: bash | |
| - name: Add GTK to PATH | |
| if: runner.os == 'Windows' | |
| run: echo "${{env.R_LIBS_USER}}\RGtk2\gtk\bin" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append | |
| - name: Check RGtk2 | |
| if: runner.os == 'Windows' | |
| run: | | |
| library(RGtk2) | |
| gtkWindowNew() | |
| shell: Rscript {0} | |
| - name: Install dependencies | |
| env: | |
| OS_TYPE: ${{ runner.os }} | |
| uses: GabrielBB/xvfb-action@v1.2 | |
| with: | |
| run: Rscript ./.github/install_deps.R | |
| - name: Create iNZightVIT directory | |
| if: runner.os == 'Windows' | |
| run: try(dir.create(file.path("~", "Documents", "iNZightVIT"), recursive = TRUE)) | |
| shell: Rscript {0} | |
| - name: Install XVFB | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get install xvfb | |
| - name: Test coverage [linux] | |
| if: runner.os == 'Linux' | |
| uses: nick-invision/retry@v1 | |
| with: | |
| timeout_minutes: 10 | |
| max_attempts: 3 | |
| command: xvfb-run --auto-servernum Rscript -e "covr::codecov()" | |
| - name: Test coverage [win] | |
| if: runner.os != 'Linux' | |
| uses: nick-invision/retry@v1 | |
| with: | |
| timeout_minutes: 10 | |
| max_attempts: 5 | |
| command: Rscript -e "covr::codecov()" | |
| - name: Clean up XVFB | |
| if: runner.os == 'Linux' | |
| run: | | |
| kill_xvfb () { | |
| local xvfb_pids=`ps aux | grep tmp/xvfb-run | grep -v grep | awk '{print $2}'` | |
| if [ "$xvfb_pids" != "" ]; then | |
| echo "Killing the following xvfb processes: $xvfb_pids" | |
| sudo kill $xvfb_pids | |
| else | |
| echo "No xvfb processes to kill" | |
| fi | |
| } | |
| kill_xvfb |