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Bugfix/351 residual flipping #354

Merged
merged 4 commits into from
Dec 19, 2023
Merged

Bugfix/351 residual flipping #354

merged 4 commits into from
Dec 19, 2023

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@tmelliott tmelliott self-assigned this Dec 18, 2023
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This PR is being deployed to Railway 🚅

Lite: ◻️ REMOVED

@tmelliott tmelliott marked this pull request as ready for review December 19, 2023 02:02
@tmelliott tmelliott merged commit 18128a6 into dev Dec 19, 2023
1 check passed
@tmelliott tmelliott deleted the bugfix/351-residual-flipping branch December 19, 2023 02:03
tmelliott added a commit that referenced this pull request Dec 20, 2023
* fix release generator script

* Track 'iNZightVIT/Lite2' changes (#293)

* Create new branch tracking iNZightVIT/Lite2 changes

* fix conflicts

* modes?

* ui fix

* fix import

* fix lite2 env variable

* prevent dataset to show before confirm

* fix url import

* remove comments

* fix rdata data selection bug

* fix(server): LITE_ -> CAS_; bug in decryption code; import wkb, openssl

- Replace LITE_ with CAS_ (for now) given this is still a hard-coded solution
- fix parentheses in the raw2char / aes_cbc_decrypt logic
- remove wkb code and just import the wkb package (minimal overhead)
- remove library calls, use namespacing instead (openssl, wkb)

* wrap LITE2 if

* add function sample_if_lite2

* fix lite2 UI

* fix datetime

---------

Co-authored-by: Charco Hui <phui285@gmail.com>

* lite_config

* fix(server): Pre-build df and assign to rvalues

It seems that row.names() and colnames() are triggering the reload, and by refactoring slightly the loading-loop seems to go away.

* prevent reading ENV unless required

* delim option on failed import (#340)

* remove keys after reading data

* rename plot_selector (#342)

* Update NEWS.md

* (shared): Generalize handling of config

Store config as an unaltered list; display version info on landing page. Minor refactor of some parameter handling.

* fix(shared): Store config in session$userData

Store LITE_VERSION and LITE_CONFIG in the session$userData object

* fix(shared): Find remaining variables to prefix

* fix(ui): Remove export data for CAS

* fix(shared): Uncommnet export data component

* fix(shared): Disable menu options in CAS mode

* remove gpairs dependency

* update news

* remove gpairs from imports (closes #25)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* Remove log error message (#348)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* fix(server): Suppress warnings produced by iNZightMapRegions()

* additional import options (#353)

Co-authored-by: Mona Lisa <email@example.com>

* feat(ui): #352 Track disconnects (#355)

* feat(ui): #352 Track disconnects

Closes: #352

* Bugfix/351 residual flipping (#354)

* fix(ui): 351 Use observeEvent instead of observe and isolate

After swapping v1 and v2, some reactive connection awakens and gets triggered by the save residuals button.

* remove terourou

* Data lifecycle management (#349)

* fix(server): #304 Delete data after importing

* bump version

---------

Co-authored-by: Charco Hui <phui285@gmail.com>
Co-authored-by: Charco Hui <charco.hui@auckland.ac.nz>
Co-authored-by: Mona Lisa <email@example.com>
tmelliott added a commit that referenced this pull request Dec 21, 2023
* fix release generator script

* Track 'iNZightVIT/Lite2' changes (#293)

* Create new branch tracking iNZightVIT/Lite2 changes

* fix conflicts

* modes?

* ui fix

* fix import

* fix lite2 env variable

* prevent dataset to show before confirm

* fix url import

* remove comments

* fix rdata data selection bug

* fix(server): LITE_ -> CAS_; bug in decryption code; import wkb, openssl

- Replace LITE_ with CAS_ (for now) given this is still a hard-coded solution
- fix parentheses in the raw2char / aes_cbc_decrypt logic
- remove wkb code and just import the wkb package (minimal overhead)
- remove library calls, use namespacing instead (openssl, wkb)

* wrap LITE2 if

* add function sample_if_lite2

* fix lite2 UI

* fix datetime

---------

Co-authored-by: Charco Hui <phui285@gmail.com>

* lite_config

* fix(server): Pre-build df and assign to rvalues

It seems that row.names() and colnames() are triggering the reload, and by refactoring slightly the loading-loop seems to go away.

* prevent reading ENV unless required

* delim option on failed import (#340)

* remove keys after reading data

* rename plot_selector (#342)

* Update NEWS.md

* (shared): Generalize handling of config

Store config as an unaltered list; display version info on landing page. Minor refactor of some parameter handling.

* fix(shared): Store config in session$userData

Store LITE_VERSION and LITE_CONFIG in the session$userData object

* fix(shared): Find remaining variables to prefix

* fix(ui): Remove export data for CAS

* fix(shared): Uncommnet export data component

* fix(shared): Disable menu options in CAS mode

* remove gpairs dependency

* update news

* remove gpairs from imports (closes #25)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* Remove log error message (#348)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* fix(server): Suppress warnings produced by iNZightMapRegions()

* additional import options (#353)

Co-authored-by: Mona Lisa <email@example.com>

* feat(ui): #352 Track disconnects (#355)

* feat(ui): #352 Track disconnects

Closes: #352

* Bugfix/351 residual flipping (#354)

* fix(ui): 351 Use observeEvent instead of observe and isolate

After swapping v1 and v2, some reactive connection awakens and gets triggered by the save residuals button.

* remove terourou

* Data lifecycle management (#349)

* fix(server): #304 Delete data after importing

* bump version (#357)

* dynamic config (#358)

Co-authored-by: Charco Hui <charcohui93@gmail.com>

* update version

---------

Co-authored-by: Charco Hui <phui285@gmail.com>
Co-authored-by: Charco Hui <charco.hui@auckland.ac.nz>
Co-authored-by: Mona Lisa <email@example.com>
Co-authored-by: Charco Hui <charcohui93@gmail.com>
tmelliott added a commit that referenced this pull request Dec 21, 2023
* Release/2023.11.9000 (#356)

* fix release generator script

* Track 'iNZightVIT/Lite2' changes (#293)

* Create new branch tracking iNZightVIT/Lite2 changes

* fix conflicts

* modes?

* ui fix

* fix import

* fix lite2 env variable

* prevent dataset to show before confirm

* fix url import

* remove comments

* fix rdata data selection bug

* fix(server): LITE_ -> CAS_; bug in decryption code; import wkb, openssl

- Replace LITE_ with CAS_ (for now) given this is still a hard-coded solution
- fix parentheses in the raw2char / aes_cbc_decrypt logic
- remove wkb code and just import the wkb package (minimal overhead)
- remove library calls, use namespacing instead (openssl, wkb)

* wrap LITE2 if

* add function sample_if_lite2

* fix lite2 UI

* fix datetime

---------

Co-authored-by: Charco Hui <phui285@gmail.com>

* lite_config

* fix(server): Pre-build df and assign to rvalues

It seems that row.names() and colnames() are triggering the reload, and by refactoring slightly the loading-loop seems to go away.

* prevent reading ENV unless required

* delim option on failed import (#340)

* remove keys after reading data

* rename plot_selector (#342)

* Update NEWS.md

* (shared): Generalize handling of config

Store config as an unaltered list; display version info on landing page. Minor refactor of some parameter handling.

* fix(shared): Store config in session$userData

Store LITE_VERSION and LITE_CONFIG in the session$userData object

* fix(shared): Find remaining variables to prefix

* fix(ui): Remove export data for CAS

* fix(shared): Uncommnet export data component

* fix(shared): Disable menu options in CAS mode

* remove gpairs dependency

* update news

* remove gpairs from imports (closes #25)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* Remove log error message (#348)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* fix(server): Suppress warnings produced by iNZightMapRegions()

* additional import options (#353)

Co-authored-by: Mona Lisa <email@example.com>

* feat(ui): #352 Track disconnects (#355)

* feat(ui): #352 Track disconnects

Closes: #352

* Bugfix/351 residual flipping (#354)

* fix(ui): 351 Use observeEvent instead of observe and isolate

After swapping v1 and v2, some reactive connection awakens and gets triggered by the save residuals button.

* remove terourou

* Data lifecycle management (#349)

* fix(server): #304 Delete data after importing

* bump version

---------

Co-authored-by: Charco Hui <phui285@gmail.com>
Co-authored-by: Charco Hui <charco.hui@auckland.ac.nz>
Co-authored-by: Mona Lisa <email@example.com>

* update version

---------

Co-authored-by: Charco Hui <phui285@gmail.com>
Co-authored-by: Charco Hui <charco.hui@auckland.ac.nz>
Co-authored-by: Mona Lisa <email@example.com>
@tmelliott tmelliott mentioned this pull request Dec 22, 2023
tmelliott added a commit that referenced this pull request Dec 22, 2023
* fix release generator script

* Track 'iNZightVIT/Lite2' changes (#293)

* Create new branch tracking iNZightVIT/Lite2 changes

* fix conflicts

* modes?

* ui fix

* fix import

* fix lite2 env variable

* prevent dataset to show before confirm

* fix url import

* remove comments

* fix rdata data selection bug

* fix(server): LITE_ -> CAS_; bug in decryption code; import wkb, openssl

- Replace LITE_ with CAS_ (for now) given this is still a hard-coded solution
- fix parentheses in the raw2char / aes_cbc_decrypt logic
- remove wkb code and just import the wkb package (minimal overhead)
- remove library calls, use namespacing instead (openssl, wkb)

* wrap LITE2 if

* add function sample_if_lite2

* fix lite2 UI

* fix datetime

---------

Co-authored-by: Charco Hui <phui285@gmail.com>

* lite_config

* fix(server): Pre-build df and assign to rvalues

It seems that row.names() and colnames() are triggering the reload, and by refactoring slightly the loading-loop seems to go away.

* prevent reading ENV unless required

* delim option on failed import (#340)

* remove keys after reading data

* rename plot_selector (#342)

* Update NEWS.md

* (shared): Generalize handling of config

Store config as an unaltered list; display version info on landing page. Minor refactor of some parameter handling.

* fix(shared): Store config in session$userData

Store LITE_VERSION and LITE_CONFIG in the session$userData object

* fix(shared): Find remaining variables to prefix

* fix(ui): Remove export data for CAS

* fix(shared): Uncommnet export data component

* fix(shared): Disable menu options in CAS mode

* remove gpairs dependency

* update news

* remove gpairs from imports (closes #25)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* Remove log error message (#348)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* fix(server): Suppress warnings produced by iNZightMapRegions()

* additional import options (#353)

Co-authored-by: Mona Lisa <email@example.com>

* feat(ui): #352 Track disconnects (#355)

* feat(ui): #352 Track disconnects

Closes: #352

* Bugfix/351 residual flipping (#354)

* fix(ui): 351 Use observeEvent instead of observe and isolate

After swapping v1 and v2, some reactive connection awakens and gets triggered by the save residuals button.

* remove terourou

* Data lifecycle management (#349)

* fix(server): #304 Delete data after importing

* bump version (#357)

* dynamic config (#358)

Co-authored-by: Charco Hui <charcohui93@gmail.com>

* Release/2023.12 -> dev (#361)

* Release/2023.11.9000 (#356)

* fix release generator script

* Track 'iNZightVIT/Lite2' changes (#293)

* Create new branch tracking iNZightVIT/Lite2 changes

* fix conflicts

* modes?

* ui fix

* fix import

* fix lite2 env variable

* prevent dataset to show before confirm

* fix url import

* remove comments

* fix rdata data selection bug

* fix(server): LITE_ -> CAS_; bug in decryption code; import wkb, openssl

- Replace LITE_ with CAS_ (for now) given this is still a hard-coded solution
- fix parentheses in the raw2char / aes_cbc_decrypt logic
- remove wkb code and just import the wkb package (minimal overhead)
- remove library calls, use namespacing instead (openssl, wkb)

* wrap LITE2 if

* add function sample_if_lite2

* fix lite2 UI

* fix datetime

---------

Co-authored-by: Charco Hui <phui285@gmail.com>

* lite_config

* fix(server): Pre-build df and assign to rvalues

It seems that row.names() and colnames() are triggering the reload, and by refactoring slightly the loading-loop seems to go away.

* prevent reading ENV unless required

* delim option on failed import (#340)

* remove keys after reading data

* rename plot_selector (#342)

* Update NEWS.md

* (shared): Generalize handling of config

Store config as an unaltered list; display version info on landing page. Minor refactor of some parameter handling.

* fix(shared): Store config in session$userData

Store LITE_VERSION and LITE_CONFIG in the session$userData object

* fix(shared): Find remaining variables to prefix

* fix(ui): Remove export data for CAS

* fix(shared): Uncommnet export data component

* fix(shared): Disable menu options in CAS mode

* remove gpairs dependency

* update news

* remove gpairs from imports (closes #25)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* Remove log error message (#348)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* fix(server): Suppress warnings produced by iNZightMapRegions()

* additional import options (#353)

Co-authored-by: Mona Lisa <email@example.com>

* feat(ui): #352 Track disconnects (#355)

* feat(ui): #352 Track disconnects

Closes: #352

* Bugfix/351 residual flipping (#354)

* fix(ui): 351 Use observeEvent instead of observe and isolate

After swapping v1 and v2, some reactive connection awakens and gets triggered by the save residuals button.

* remove terourou

* Data lifecycle management (#349)

* fix(server): #304 Delete data after importing

* bump version

---------

Co-authored-by: Charco Hui <phui285@gmail.com>
Co-authored-by: Charco Hui <charco.hui@auckland.ac.nz>
Co-authored-by: Mona Lisa <email@example.com>

* update version

---------

Co-authored-by: Charco Hui <phui285@gmail.com>
Co-authored-by: Charco Hui <charco.hui@auckland.ac.nz>
Co-authored-by: Mona Lisa <email@example.com>

* remove multivariate module

* activate multivariate

* add iNZightMultivariate to install

* Update NEWS

* update default env

* Format and tidy code (#362)

* fix(ui): Update mark_html() call to generate HTML in-place

- remove HTML files
- clear some other files
- update gitignore

* Format all .R files
* Remove commented code chunks

* update news

---------

Co-authored-by: Charco Hui <phui285@gmail.com>
Co-authored-by: Charco Hui <charco.hui@auckland.ac.nz>
Co-authored-by: Mona Lisa <email@example.com>
Co-authored-by: Charco Hui <charcohui93@gmail.com>
tmelliott added a commit that referenced this pull request Dec 22, 2023
* fix release generator script

* Track 'iNZightVIT/Lite2' changes (#293)

* Create new branch tracking iNZightVIT/Lite2 changes

* fix conflicts

* modes?

* ui fix

* fix import

* fix lite2 env variable

* prevent dataset to show before confirm

* fix url import

* remove comments

* fix rdata data selection bug

* fix(server): LITE_ -> CAS_; bug in decryption code; import wkb, openssl

- Replace LITE_ with CAS_ (for now) given this is still a hard-coded solution
- fix parentheses in the raw2char / aes_cbc_decrypt logic
- remove wkb code and just import the wkb package (minimal overhead)
- remove library calls, use namespacing instead (openssl, wkb)

* wrap LITE2 if

* add function sample_if_lite2

* fix lite2 UI

* fix datetime

---------

Co-authored-by: Charco Hui <phui285@gmail.com>

* lite_config

* fix(server): Pre-build df and assign to rvalues

It seems that row.names() and colnames() are triggering the reload, and by refactoring slightly the loading-loop seems to go away.

* prevent reading ENV unless required

* delim option on failed import (#340)

* remove keys after reading data

* rename plot_selector (#342)

* Update NEWS.md

* (shared): Generalize handling of config

Store config as an unaltered list; display version info on landing page. Minor refactor of some parameter handling.

* fix(shared): Store config in session$userData

Store LITE_VERSION and LITE_CONFIG in the session$userData object

* fix(shared): Find remaining variables to prefix

* fix(ui): Remove export data for CAS

* fix(shared): Uncommnet export data component

* fix(shared): Disable menu options in CAS mode

* remove gpairs dependency

* update news

* remove gpairs from imports (closes #25)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* Remove log error message (#348)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* fix(server): Suppress warnings produced by iNZightMapRegions()

* additional import options (#353)

Co-authored-by: Mona Lisa <email@example.com>

* feat(ui): #352 Track disconnects (#355)

* feat(ui): #352 Track disconnects

Closes: #352

* Bugfix/351 residual flipping (#354)

* fix(ui): 351 Use observeEvent instead of observe and isolate

After swapping v1 and v2, some reactive connection awakens and gets triggered by the save residuals button.

* remove terourou

* Data lifecycle management (#349)

* fix(server): #304 Delete data after importing

* bump version (#357)

* dynamic config (#358)

Co-authored-by: Charco Hui <charcohui93@gmail.com>

* Release/2023.12 -> dev (#361)

* Release/2023.11.9000 (#356)

* fix release generator script

* Track 'iNZightVIT/Lite2' changes (#293)

* Create new branch tracking iNZightVIT/Lite2 changes

* fix conflicts

* modes?

* ui fix

* fix import

* fix lite2 env variable

* prevent dataset to show before confirm

* fix url import

* remove comments

* fix rdata data selection bug

* fix(server): LITE_ -> CAS_; bug in decryption code; import wkb, openssl

- Replace LITE_ with CAS_ (for now) given this is still a hard-coded solution
- fix parentheses in the raw2char / aes_cbc_decrypt logic
- remove wkb code and just import the wkb package (minimal overhead)
- remove library calls, use namespacing instead (openssl, wkb)

* wrap LITE2 if

* add function sample_if_lite2

* fix lite2 UI

* fix datetime

---------

Co-authored-by: Charco Hui <phui285@gmail.com>

* lite_config

* fix(server): Pre-build df and assign to rvalues

It seems that row.names() and colnames() are triggering the reload, and by refactoring slightly the loading-loop seems to go away.

* prevent reading ENV unless required

* delim option on failed import (#340)

* remove keys after reading data

* rename plot_selector (#342)

* Update NEWS.md

* (shared): Generalize handling of config

Store config as an unaltered list; display version info on landing page. Minor refactor of some parameter handling.

* fix(shared): Store config in session$userData

Store LITE_VERSION and LITE_CONFIG in the session$userData object

* fix(shared): Find remaining variables to prefix

* fix(ui): Remove export data for CAS

* fix(shared): Uncommnet export data component

* fix(shared): Disable menu options in CAS mode

* remove gpairs dependency

* update news

* remove gpairs from imports (closes #25)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* Remove log error message (#348)

* fix(server): Set shiny host to 0.0.0.0

* update the correct dockerfile

* fix(server): Disable loading R directory (does not exist)

* fix arg

* fix(server): Suppress warnings produced by iNZightMapRegions()

* additional import options (#353)

Co-authored-by: Mona Lisa <email@example.com>

* feat(ui): #352 Track disconnects (#355)

* feat(ui): #352 Track disconnects

Closes: #352

* Bugfix/351 residual flipping (#354)

* fix(ui): 351 Use observeEvent instead of observe and isolate

After swapping v1 and v2, some reactive connection awakens and gets triggered by the save residuals button.

* remove terourou

* Data lifecycle management (#349)

* fix(server): #304 Delete data after importing

* bump version

---------

Co-authored-by: Charco Hui <phui285@gmail.com>
Co-authored-by: Charco Hui <charco.hui@auckland.ac.nz>
Co-authored-by: Mona Lisa <email@example.com>

* update version

---------

Co-authored-by: Charco Hui <phui285@gmail.com>
Co-authored-by: Charco Hui <charco.hui@auckland.ac.nz>
Co-authored-by: Mona Lisa <email@example.com>

* remove multivariate module

* activate multivariate

* add iNZightMultivariate to install

* Update NEWS

* update default env

* Format and tidy code (#362)

* fix(ui): Update mark_html() call to generate HTML in-place

- remove HTML files
- clear some other files
- update gitignore

* Format all .R files
* Remove commented code chunks

* update news

---------

Co-authored-by: Charco Hui <phui285@gmail.com>
Co-authored-by: Charco Hui <charco.hui@auckland.ac.nz>
Co-authored-by: Mona Lisa <email@example.com>
Co-authored-by: Charco Hui <charcohui93@gmail.com>
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Variables swapping when storing residuals of linear model? Linear trend disappears after storing residuals
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