iNZightVIT · tmelliott · Dec 11, 2023 · Dec 11, 2023 · Dec 11, 2023 · Dec 11, 2023
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -24,7 +24,6 @@ Imports:
     colorspace,
     DT,
     GGally,
-    gpairs,
     iNZightMaps,
     iNZightMR,
     iNZightPlots,

diff --git a/Dockerfile b/Dockerfile
@@ -4,7 +4,7 @@ RUN apt-get update && apt-get install -y \
     cmake \
     libpoppler-cpp-dev
 RUN install2.r --error --skipinstalled \
-    colorspace countrycode DT GGally ggmap gpairs plotly RcppTOML readr readtext readxl RgoogleMaps RJSONIO reshape2 sas7bdat shinyalert shinycssloaders shinydashboard shinyjs shinyWidgets srvyr styler survey viridis XML remotes vctrs pillar magrittr lifecycle crayon tibble rlang fansi cli ps rprojroot fs desc processx proxy wk e1071 units s2 Rcpp DBI classInt stringi generics cpp11 tidyselect stringr purrr dplyr sys openssl jsonlite curl sp png colorspace viridisLite RColorBrewer farver scales isoband gtable minqa MatrixModels SparseM timechange bit tzdb vroom hms blob zoo lubridate tidyr srvyr readr forcats dbplyr sass tinytex bslib xfun highr evaluate rmarkdown yaml digest rstudioapi htmltools htmlwidgets checkmate knitr matrixStats htmlTable data.table maditr mvtnorm estimability httr rex waldo pkgload callr sf jpeg plyr ggplot2 s20x quantreg hexbin expss emmeans dichromat chron covr testthat rgeos lwgeom ggmap countrycode maptools XML settings validate markdown gridtext patchwork ggtext RcppEigen nloptr lme4 labelled sandwich TH.data pbkrtest abind carData broom.helpers multcomp ggrepel car Rttf2pt1 extrafontdb extrafont FNN productplots vipor beeswarm waffle hextri gridSVG ggthemes ggridges ggmosaic ggbeeswarm shinylogs wkb
+    colorspace countrycode DT GGally ggmap plotly RcppTOML readr readtext readxl RgoogleMaps RJSONIO reshape2 sas7bdat shinyalert shinycssloaders shinydashboard shinyjs shinyWidgets srvyr styler survey viridis XML remotes vctrs pillar magrittr lifecycle crayon tibble rlang fansi cli ps rprojroot fs desc processx proxy wk e1071 units s2 Rcpp DBI classInt stringi generics cpp11 tidyselect stringr purrr dplyr sys openssl jsonlite curl sp png colorspace viridisLite RColorBrewer farver scales isoband gtable minqa MatrixModels SparseM timechange bit tzdb vroom hms blob zoo lubridate tidyr srvyr readr forcats dbplyr sass tinytex bslib xfun highr evaluate rmarkdown yaml digest rstudioapi htmltools htmlwidgets checkmate knitr matrixStats htmlTable data.table maditr mvtnorm estimability httr rex waldo pkgload callr sf jpeg plyr ggplot2 s20x quantreg hexbin expss emmeans dichromat chron covr testthat rgeos lwgeom ggmap countrycode maptools XML settings validate markdown gridtext patchwork ggtext RcppEigen nloptr lme4 labelled sandwich TH.data pbkrtest abind carData broom.helpers multcomp ggrepel car Rttf2pt1 extrafontdb extrafont FNN productplots vipor beeswarm waffle hextri gridSVG ggthemes ggridges ggmosaic ggbeeswarm shinylogs wkb
 ARG GITHUB_PAT
 ENV GITHUB_PAT ${GITHUB_PAT}
 # write GITHUB_PAT to .Renviron

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,7 @@
 - fix bug in Model Fitting module (panel had a duplicate ID, resulting in some weird behaviour)
+- remove gpairs dependency
+
+- major update: integrate instance-configurability to allow various instances to run on the same deployment (e.g., the Census at School build)
 
 ---
 

diff --git a/panels/F1_QuickExplore/4_missing.values.help.html b/panels/F1_QuickExplore/4_missing.values.help.html
@@ -0,0 +1,96 @@
+<!DOCTYPE html>
+<html>
+<head>
+<meta charset="utf-8">
+<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
+<title>Missing values</title>
+<style type="text/css">
+body {
+  font-family: sans-serif;
+  max-width: 800px;
+  margin: auto;
+  padding: 1em;
+  line-height: 1.5;
+  box-sizing: border-box;
+}
+body, .footnotes, code { font-size: .9em; }
+li li { font-size: .95em; }
+*, *:before, *:after {
+  box-sizing: inherit;
+}
+pre, img { max-width: 100%; }
+pre, pre:hover {
+  white-space: pre-wrap;
+  word-break: break-all;
+}
+pre code {
+  display: block;
+  overflow-x: auto;
+}
+code { font-family: 'DejaVu Sans Mono', 'Droid Sans Mono', 'Lucida Console', Consolas, Monaco, monospace; }
+:not(pre) > code, code[class] { background-color: #F8F8F8; }
+code.language-undefined, pre > code:not([class]) {
+  background-color: inherit;
+  border: 1px solid #eee;
+}
+table {
+  margin: auto;
+  border-top: 1px solid #666;
+}
+table thead th { border-bottom: 1px solid #ddd; }
+th, td { padding: 5px; }
+thead, tfoot, tr:nth-child(even) { background: #eee; }
+blockquote {
+  color: #666;
+  margin: 0;
+  padding-left: 1em;
+  border-left: 0.5em solid #eee;
+}
+hr, .footnotes::before { border: 1px dashed #ddd; }
+.frontmatter { text-align: center; }
+#TOC .numbered li { list-style: none; }
+#TOC .numbered { padding-left: 0; }
+#TOC .numbered ul { padding-left: 1em; }
+table, .body h2 { border-bottom: 1px solid #666; }
+.body .appendix, .appendix ~ h2 { border-bottom-style: dashed; }
+.footnote-ref a::before { content: "["; }
+.footnote-ref a::after { content: "]"; }
+section.footnotes::before {
+  content: "";
+  display: block;
+  max-width: 20em;
+}
+
+@media print {
+  body {
+    font-size: 12pt;
+    max-width: 100%;
+  }
+  tr, img { page-break-inside: avoid; }
+}
+@media only screen and (min-width: 992px) {
+  pre { white-space: pre; }
+}
+</style>
+</head>
+<body>
+<div class="include-before">
+</div>
+<div class="frontmatter">
+<div class="title"><h1>Missing values</h1></div>
+<div class="author"><h2></h2></div>
+<div class="date"><h3></h3></div>
+</div>
+<div class="body">
+<h4 id="missing-values">Missing values</h4>
+A plot of all missing values is produced. The bars at the top show how moch is 
+missing (grey) and what not (red). Below the bars all possible combinations of 
+missing versus not missing is plotted in table like plot. Next to the plot are 
+the frequencies of the observed combinations.<br>
+The blue button labeled "GET TABLE OF ROW COMBINATIONS" produces a table like 
+represantation of the plot. If this is very complex it can take a while to load.
+</div>
+<div class="include-after">
+</div>
+</body>
+</html>
diff --git a/panels/F1_QuickExplore/8_matrix.plot.help.html b/panels/F1_QuickExplore/8_matrix.plot.help.html
@@ -0,0 +1,94 @@
+<!DOCTYPE html>
+<html>
+<head>
+<meta charset="utf-8">
+<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
+<title>Matrix plots</title>
+<style type="text/css">
+body {
+  font-family: sans-serif;
+  max-width: 800px;
+  margin: auto;
+  padding: 1em;
+  line-height: 1.5;
+  box-sizing: border-box;
+}
+body, .footnotes, code { font-size: .9em; }
+li li { font-size: .95em; }
+*, *:before, *:after {
+  box-sizing: inherit;
+}
+pre, img { max-width: 100%; }
+pre, pre:hover {
+  white-space: pre-wrap;
+  word-break: break-all;
+}
+pre code {
+  display: block;
+  overflow-x: auto;
+}
+code { font-family: 'DejaVu Sans Mono', 'Droid Sans Mono', 'Lucida Console', Consolas, Monaco, monospace; }
+:not(pre) > code, code[class] { background-color: #F8F8F8; }
+code.language-undefined, pre > code:not([class]) {
+  background-color: inherit;
+  border: 1px solid #eee;
+}
+table {
+  margin: auto;
+  border-top: 1px solid #666;
+}
+table thead th { border-bottom: 1px solid #ddd; }
+th, td { padding: 5px; }
+thead, tfoot, tr:nth-child(even) { background: #eee; }
+blockquote {
+  color: #666;
+  margin: 0;
+  padding-left: 1em;
+  border-left: 0.5em solid #eee;
+}
+hr, .footnotes::before { border: 1px dashed #ddd; }
+.frontmatter { text-align: center; }
+#TOC .numbered li { list-style: none; }
+#TOC .numbered { padding-left: 0; }
+#TOC .numbered ul { padding-left: 1em; }
+table, .body h2 { border-bottom: 1px solid #666; }
+.body .appendix, .appendix ~ h2 { border-bottom-style: dashed; }
+.footnote-ref a::before { content: "["; }
+.footnote-ref a::after { content: "]"; }
+section.footnotes::before {
+  content: "";
+  display: block;
+  max-width: 20em;
+}
+
+@media print {
+  body {
+    font-size: 12pt;
+    max-width: 100%;
+  }
+  tr, img { page-break-inside: avoid; }
+}
+@media only screen and (min-width: 992px) {
+  pre { white-space: pre; }
+}
+</style>
+</head>
+<body>
+<div class="include-before">
+</div>
+<div class="frontmatter">
+<div class="title"><h1>Matrix plots</h1></div>
+<div class="author"><h2></h2></div>
+<div class="date"><h3></h3></div>
+</div>
+<div class="body">
+<h4 id="matrix-plots">Matrix plots</h4>
+From the dropdown menu one or more columns can be selected and all possible 
+pairs between those column are plotted. The plots are presented in form of a 
+matrix. For more information please see the help on the ggpairs function in the 
+R GGally package.
+</div>
+<div class="include-after">
+</div>
+</body>
+</html>