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Fix html and recursion#68

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hoelzer merged 12 commits intomainhoelzer-lab/ribap:mainfrom fix-html-and-recursionhoelzer-lab/ribap:fix-html-and-recursionCopy head branch name to clipboardOct 23, 2024

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Commits on Oct 21, 2024

• add set recursion limit parameter

  hoelzer

  committedOct 21, 2024
  45029b7

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• commit before to fix #66, this commit to fix #65

  hoelzer

  committedOct 21, 2024
  8bc91c0

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• copy the script to make it executable in the modified py command

  hoelzer

  committedOct 21, 2024
  8b1de70

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Commits on Oct 22, 2024

• fix problem in UpSet init script when FASTAs were not renamed (bc GFF input)

  hoelzer

  committedOct 22, 2024
  87e6af6

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• fix similar problem in create MSA script when FASTAs were not renamed (bc GFF input)

  hoelzer

  committedOct 22, 2024
  6772a78

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• copy web dir to bin to still make it accessible in newer nf versions where home is not mounted in singularity

  hoelzer

  committedOct 22, 2024
  babfebd

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• did not work, rm web dir from bin

  hoelzer

  committedOct 22, 2024
  17b3de1

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• if web.tar.gz can not be copied, download from OSF

  hoelzer

  committedOct 22, 2024
  211a6f7

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• also add GitHub clone fallback for web.tar.gz

  hoelzer

  committedOct 22, 2024
  99f89e2

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• even better: copy the files needed as input to the processes

  hoelzer

  committedOct 22, 2024
  abb1a95

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• finalize handling of the py script and web dir. Now final testing at HPC w/ singularity

  hoelzer

  committedOct 22, 2024
  164db34

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Commits on Oct 23, 2024

• HPC test done. Finalize.

  hoelzer

  committedOct 23, 2024
  5da3643

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