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@histopathology

Histopathology Research

Collection of Repositories related to Histopathology and Image Analysis
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  1. Deeplearning-digital-pathology Deeplearning-digital-pathology Public

    Forked from zhaoxuanma/Deeplearning-digital-pathology

    Full package for applying deep learning to virtual slides.

    Python 2

  2. FQPath FQPath Public

    Forked from mahdihosseini/FQPath

    No-Reference Focus Quality Assessment of Digital Pathology Images [IEEE TMI 2019]

    MATLAB 1

  3. qupath-extension-sam qupath-extension-sam Public

    Forked from ksugar/qupath-extension-sam

    QuPath extension for Segment Anything Model (SAM)

    Java 1

  4. OpenAL OpenAL Public

    Forked from miccaiif/OpenAL

    Official PyTorch Code of our MICCAI2023 paper OpenAL

    1

  5. WSI_histology WSI_histology Public

    Forked from tovaroe/WSI_histology

    MATLAB functionality for working with whole slide images of histological slide scans

    MATLAB 1

  6. wsinfer wsinfer Public

    Forked from SBU-BMI/wsinfer

    🔥🚀 Blazingly fast pipeline for patch-based classification in whole slide images

    Python 1

Repositories

Showing 10 of 397 repositories
  • AI_handson Public Forked from enigmanx20/AI_handson

    Realtime prostate cancer segmentation demo

    histopathology/AI_handson’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Apr 11, 2025
  • DANEELpath Public Forked from iviecomarti/DANEELpath

    Digital Analysis tools for Neuroblastoma Models

    histopathology/DANEELpath’s past year of commit activity
    Groovy 0 GPL-3.0 1 0 0 Updated Apr 4, 2025
  • slide2vec Public Forked from clemsgrs/slide2vec

    WSI feature extraction

    histopathology/slide2vec’s past year of commit activity
    Python 0 1 0 0 Updated Mar 17, 2025
  • wsidicom Public Forked from imi-bigpicture/wsidicom

    Python package for reading DICOM WSI file sets.

    histopathology/wsidicom’s past year of commit activity
    Python 0 Apache-2.0 9 0 0 Updated Mar 13, 2025
  • SPIDER Public Forked from HistAI/SPIDER

    SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face 🤗.

    histopathology/SPIDER’s past year of commit activity
    0 1 0 0 Updated Mar 5, 2025
  • tiatoolbox Public Forked from TissueImageAnalytics/tiatoolbox

    Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

    histopathology/tiatoolbox’s past year of commit activity
    Python 0 90 0 0 Updated Mar 2, 2025
  • MONAI Public Forked from Project-MONAI/MONAI

    AI Toolkit for Healthcare Imaging

    histopathology/MONAI’s past year of commit activity
    Python 0 Apache-2.0 1,172 0 0 Updated Mar 2, 2025
  • HistomicsTK Public Forked from DigitalSlideArchive/HistomicsTK

    A Python toolkit for pathology image analysis algorithms.

    histopathology/HistomicsTK’s past year of commit activity
    Python 0 Apache-2.0 121 0 0 Updated Mar 2, 2025
  • cbioportal Public Forked from cBioPortal/cbioportal

    cBioPortal for Cancer Genomics

    histopathology/cbioportal’s past year of commit activity
    Java 0 AGPL-3.0 657 0 0 Updated Feb 28, 2025
  • TRIDENT Public Forked from mahmoodlab/TRIDENT

    Toolkit for large-scale whole-slide image processing.

    histopathology/TRIDENT’s past year of commit activity
    Python 0 25 0 0 Updated Feb 13, 2025
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