#ROP : Read origin protocol

ROP is a computational protocol aimed to discover the source of all reads, which originate from complex RNA molecules, recombinant antibodies and microbial communities. The ROP accounts for 98.8% of all reads across poly(A) and ribo-depletion protocols, compared to 83.8% by conventional reference-based protocols. ROP profiles repeats, circRNAs, gene fusions, trans-splicing events, recombined B/T-cell receptor sequences and microbial communities. The ‘dumpster diving’ profile of unmapped reads output by our method is not limited to RNA-Seq technology and may be applied to whole-exome and whole-genome sequencing.

We switched to SourceForge to store the official releases of ROP : https://sourceforge.net/projects/rop2/. The code at github is in permanent development and should be used for development only. Consider contacting smangul@ucla.edu

For more details see: https://sergheimangul.wordpress.com/rop/

ROP Tutorial: https://github.com/smangul1/rop/wiki