CellProfiler 4.2.x Dev

This is the dev envrionment for CellProfiler 4.2.x-related work.

Mostly it just serves to reproduce a pixi setup.

Setup

Clone the directory and setup submodules:

git clone git@github.com:gnodar01/cp-42x-dev.git
git submodule init
git submodule update --remote

Install pixi

curl -fsSL https://pixi.sh/install.sh | bash

Install the project dependencies:

pixi install --all

Run cellprofiler:

pixi run -e dev cp

or activate the python envrionment

pixi shell -e dev

NOTE: make sure to run pixi commands from the top level of cp-42x-dev.
If, for instance, you run it from within the release/ submodule, which has its
own pixi setup, you will activate the wrong environment. Once the environment
is active, you can cd into release or wherever else.