Code

Multi series and ZCT support#28

Code

Merged

chris-allan merged 29 commits intoglencoesoftware:masterglencoesoftware/bioformats2raw:masterfrom chris-allan:multi-series-zctchris-allan/bioformats2raw:multi-series-zctCopy head branch name to clipboardApr 21, 2020

+390-106

Commits

Commits on Apr 20, 2020

• Modernise build.gradle for Gradle 7+

  chris-allan

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  e65658a

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• Add some documentation for fake INI file creation

  chris-allan

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  5083a0a

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• Fix smaller tile size test case

  chris-allan

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  9ef296b

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• Check the output file more thoroughly

  chris-allan

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  9d7a60f

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• More descriptive documentation

  chris-allan

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  fb99ce7

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• Adjust test case for multi-series writing

  chris-allan

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  61d6c2d

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• Add test case for more than one series

  chris-allan

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• Implementation for multi-series conversion

  chris-allan

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  22b1dff

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• Fix style

  chris-allan

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  63ba9fc

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• Adjust test cases for ZCT

  chris-allan

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  6a8827a

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• Add test cases for multi-ZCT

  chris-allan

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  2bc9140

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• Make pyramid arrays contain ZCT dimensions

  chris-allan

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  e39ecd5

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• Fix style

  chris-allan

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  a866782

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• Expand checks to include special pixels

  chris-allan

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  23aa6e5

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• Adjust test case to defer output directory creation

  chris-allan

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  221f080

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• Fix directory creation in converter

  chris-allan

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  5a38894

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• Fix style

  chris-allan

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  b11659f

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• Add test case for tile size that does not divide evenly

  chris-allan

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  be80b0c

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• Use tile size from metadata not blindly from input

  chris-allan

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  b9e9d79

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• Disabling until n5-zarr padCrop() is fixed

  chris-allan

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  2c80fea

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• Use junit4 ignore instead

  chris-allan

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Commits on Apr 21, 2020

• Add dimension order specification, assignment and test

  chris-allan

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  eaac2b3

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• Add test case for forced dimension order

  chris-allan

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  500aa1c

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• Add configurable dimension order

  chris-allan

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• Add test case for different dimension order

  chris-allan

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  e252461

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• Do not set globally

  chris-allan

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  273ae6c

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• Fix style

  chris-allan

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  dc61da6

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• Set current bioformats2raw layout version in metadata

  chris-allan

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  e5b747c

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• Use our version of n5-zarr temporarily

  chris-allan

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  c9b0d60

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