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Extend correlating annotation element bounding boxes
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This ensures that if the bounding box is correlated from data files,
folders, or item metadata, the annotation id and name is also correlated
with the augmented data for the annotation element.
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manthey committed Sep 10, 2024
1 parent d9bc4b5 commit 7adcd96
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Showing 2 changed files with 13 additions and 5 deletions.
2 changes: 1 addition & 1 deletion CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
### Bug Fixes

- Fix scaling small images in the multi source with bicubic smoothing ([#1627](../../pull/1627))
- Fix correlating annotation bounding boxes on adjacent items for plottable data ([#1628](../../pull/1628))
- Fix correlating annotation bounding boxes on adjacent items for plottable data ([#1628](../../pull/1628), ([#1632](../../pull/1632))

## 1.29.7

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16 changes: 12 additions & 4 deletions girder_annotation/girder_large_image_annotation/utils/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -780,8 +780,7 @@ def _keysToColumns(self, columns, parts, doctype, getData, selector, length):
if len(cols) == 4:
# If we load all of these from annotation elements, use all
# three keys:
# for akey in {'annotation.id', 'annotation.name', 'annotationelement.id'}:
for akey in {'annotationelement.id'}:
for akey in {'annotation.id', 'annotation.name', 'annotationelement.id'}:
if self._datacolumns and akey in self._datacolumns:
self._requiredColumns.add(akey)
self._ensureColumn(
Expand Down Expand Up @@ -1014,6 +1013,10 @@ def _collectColumns(self, columns, recordlist, doctype, first=True, iid='', aid=
lambda record, data, row: record['label']['value'])
self._commonColumn(columns, 'annotationelement.type', doctype, getData,
lambda record, data, row: record['type'])
self._commonColumn(columns, 'annotation.id', doctype, getData,
lambda record, data, row: str(record['_aid']))
self._commonColumn(columns, 'annotation.name', doctype, getData,
lambda record, data, row: str(record['_aname']))
self._commonColumn(columns, 'bbox.x0', doctype, getData,
lambda record, data, row: record['_bbox']['lowx'])
self._commonColumn(columns, 'bbox.y0', doctype, getData,
Expand Down Expand Up @@ -1054,6 +1057,8 @@ def _getColumnsFromAnnotations(self, columns):
if ((not self._sources or 'annotationelement' in self._sources) and
Annotationelement().countElements(annot) <= self.maxAnnotationElements):
for element in Annotationelement().yieldElements(annot, bbox=True):
element['_aid'] = annot['_id']
element['_aname'] = annot['annotation']['name']
count += self._collectColumns(
columns, [element], 'annotationelement', iid=iid, aid=str(annot['_id']))
if not iidx:
Expand Down Expand Up @@ -1141,15 +1146,18 @@ def computeSelectorAxis(record, data, row):
return 0
rows = {}
cols = sorted({col for col in self._compute['columns'] if col in self._datacolumns})
for kidx, key in enumerate(cols):
lencols = len(cols)
needcols = cols + sorted(set(self._requiredColumns) - set(cols) - self.computeColumns)
for kidx, key in enumerate(needcols):
for row, value in self._datacolumns[key].items():
if not kidx:
rows[row] = [value]
elif row in rows and len(rows[row]) == kidx:
rows[row].append(value)
rows = {k: row for k, row in rows.items() if len(row) == len(cols)}
rows = {k: row for k, row in rows.items() if len(row) == len(needcols)}
if not len(rows):
return 0
rows = {k: row[:lencols] for k, row in rows.items()}
if not self._computeFunction(rows):
return 0
for key in self.computeColumns:
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