Merge PR #252 (branch 'feature/TOMAS') into dev/14.2.0

Resolved conflicts in:
	CHANGELOG.md
	src/GCHP_GridComp/GEOSChem_GridComp/CMakeLists.txt
	src/GCHP_GridComp/GEOSChem_GridComp/geos-chem
	src/GCHP_GridComp/HEMCO_GridComp/HEMCO

Signed-off-by: Melissa Sulprizio <mpayer@seas.harvard.edu>

.github/ISSUE_TEMPLATE/config.yml

@@ -0,0 +1,5 @@
+blank_issues_enabled: false
+contact_links:
+  - name: GCHP user manual
+    url: https://gchp.readthedocs.io/en/stable
+    about: Click this link to read the GCHP user manual.

.github/ISSUE_TEMPLATE/new-feature-or-discussion.md

@@ -0,0 +1,17 @@
+---
+name: Request a new GCHP feature or start a discussion
+about: Use this template for topics relevant to the GCHP superproject. For GEOS-Chem, HEMCO, or other submodule see the respective repositories on Github.
+---
+
+### Name and Institution (Required)
+
+Name:
+Institution:
+
+### Confirm you have reviewed the following documentation
+
+- [ ] [Contributing guidelines](https://gchp.readthedocs.io/en/latest/reference/CONTRIBUTING.html)
+
+### New GCHP feature or discussion
+
+Please provide a clear and concise overview of the discussion topic or new feature requested.

.github/ISSUE_TEMPLATE/question-issue.md

@@ -0,0 +1,21 @@
+---
+name: Ask a question about or report an issue with GCHP
+about: Use this template for topics relevant to the GCHP superproject. For GEOS-Chem, HEMCO, or other submodule see the respective repositories on Github.
+---
+
+### Name and Institution (Required)
+
+Name:
+Institution:
+
+### Confirm you have reviewed the following documentation
+
+- [ ] [Support guidelines](https://gchp.readthedocs.io/en/latest/reference/SUPPORT.html)
+- [ ] [User manuals](https://gchp.readthedocs.io/en/latest/geos-chem-shared-docs/supplemental-guides/related-docs.html)
+- [ ] [Debugging GEOS-Chem and HEMCO errors](https://gchp.readthedocs.io/en/latest/geos-chem-shared-docs/supplemental-guides/debug-guide.html)
+- [ ] [Current and past Github issues](https://github.com/geoschem/GCHP/issues)
+
+### Description of your issue or question
+
+Please provide as much detail as possible. Always include the GCHP version number and any relevant configuration and log files.
+

.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,24 @@
+### Name and Institution (Required)
+
+Name:
+Institution:
+
+### Confirm you have reviewed the following documentation
+
+- [ ] [Contributing guidelines](https://gchp.readthedocs.io/en/latest/reference/CONTRIBUTING.html)
+
+### Describe the update
+
+Please provide a clear and concise overview of the update.
+
+### Expected changes
+
+Please provide details on how this update will impact model output and include plots or tables as needed.
+
+### Reference(s)
+
+If this is a science update, please provide a literature citation.
+
+### Related Github Issue(s)
+
+Please link to the corresponding Github issue here. If fixing a bug, there should be an issue describing it with steps to reproduce.

.github/workflows/findRefKey.sh

@@ -25,25 +25,36 @@ hash=$3
 
 
 commits=`git rev-list --max-count=${MAX_COMMITS} ${hash}`
-describe_command="git describe --tags"
+recent_tags=`git tag --sort=-v:refname --list "[0-9]*" | head -n 5`
 
 # in reverse chronological order we query dynamodb for the last
 # successful simulation run
 for commit in ${commits}
 do
-    find_previous_tag
-
-    # query dynamodb for the given primary key simulation
-    output=`aws dynamodb get-item \
-        --table-name geoschem_testing \
-        --key "{\"InstanceID\": {\"S\": \"${primary_key}\"}}"`
-    # Check if the simulation for given primary key exists and ran
-    # successfully print out the first successful primary key and exit
-    if [[ `echo $output | jq '.Item.ExecStatus.S | contains("SUCCESSFUL")'` == "true" ]] \
-    && [[ `echo $output | jq 'any(.Item.Stages.L[].M.Name.S; . == "RunGCHP")'` == "true" ]]; then
-        echo $primary_key
-        exit 0
-    fi
+    exclude_string=""
+
+    for tag in ${recent_tags}
+    do
+        if [[ ! -z $exclude_string ]]; then
+            describe_command="git describe ${exclude_string} --tags"
+        else
+            describe_command="git describe --tags"
+        fi
+        find_previous_tag
+
+        # query dynamodb for the given primary key simulation
+        output=`aws dynamodb get-item \
+            --table-name geoschem_testing \
+            --key "{\"InstanceID\": {\"S\": \"${primary_key}\"}}"`
+        # Check if the simulation for given primary key exists and ran
+        # successfully print out the first successful primary key and exit
+        if [[ `echo $output | jq '.Item.ExecStatus.S | contains("SUCCESSFUL")'` == "true" ]] \
+        && [[ `echo $output | jq 'any(.Item.Stages.L[].M.Name.S; . == "RunGCHP")'` == "true" ]]; then
+            echo $primary_key
+            exit 0
+        fi
+        exclude_string="${exclude_string} --exclude ${tag}"
+    done
 done
 
 echo "Error: No successful primary key found within $MAX_COMMITS commits"

.github/workflows/spack-deployment-workflow.yml

@@ -34,7 +34,7 @@ jobs:
       - name: Install dependencies
         run: |
           set -x
-          conda install -y -c conda-forge gh flake8 mypy isort
+          conda install -y -c conda-forge gh flake8 mypy isort curl
       - name: Login with PAT
         run: |
           git config --global user.email "lestrada00@gmail.com"