Remove “MGI:” from MGI prefix expansion. #201
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
Hi @balhoff. There might be some confusion here. One of the MGI: s in the MGI doubling is part of the MGI identifier itself. The other is the prefix. That is why we need the MGI: in column 2 of a GPAD file. The MGI: in that string is part of the identifier. |
|
I get that—I think I worded it awkwardly. I took it out of the prefix expansion so that it would stay as part of the identifier and not be treated as a prefix. The GPADs should be correct now. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Fixes #199. This was requested by MGI, although geneontology/go-site#91 suggests that removing the
MGI: doubling is desired eventually. I will open a separate PR to change https://github.com/prefixcommons/biocontext/blob/master/registry/go_context.jsonld.