[pre-commit.ci] pre-commit autoupdate

.pre-commit-config.yaml

@@ -16,7 +16,7 @@ repos:
       - id: trailing-whitespace
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.8.6"
+    rev: "v0.9.1"
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]
@@ -28,7 +28,7 @@ repos:
   #     - id: shellcheck
 
   - repo: https://github.com/PyCQA/bandit
-    rev: 1.8.0
+    rev: 1.8.2
     hooks:
       - id: bandit
         args: [--exit-zero]
@@ -61,6 +61,6 @@ repos:
         additional_dependencies:
           - tomli
   - repo: https://github.com/astral-sh/uv-pre-commit
-    rev: 0.5.14
+    rev: 0.5.18
     hooks:
       - id: uv-lock

gplugins/common/utils/add_simulation_markers.py

@@ -91,9 +91,9 @@ def add_simulation_markers(
         port_source_name = port_source.name
         warnings.warn(f"Selecting port_source_name={port_source_name!r} instead.")
 
-    assert isinstance(
-        component, Component
-    ), f"component needs to be a gf.Component, got Type {type(component)}"
+    assert isinstance(component, Component), (
+        f"component needs to be a gf.Component, got Type {type(component)}"
+    )
 
     # Add port monitors
     for port_name in port_names:

gplugins/common/utils/convert_sparameters.py

@@ -46,9 +46,9 @@ def pandas_to_numpy(df: pd.DataFrame, port_map=None) -> np.ndarray:
     if port_map is None:
         port_map = {f"o{i}@0": i for i in idxs}
     rev_port_map = {i: p for p, i in port_map.items()}
-    assert len(rev_port_map) == len(
-        port_map
-    ), "Duplicate port indices found in port_map"
+    assert len(rev_port_map) == len(port_map), (
+        "Duplicate port indices found in port_map"
+    )
 
     s_map = {
         s: tuple(rev_port_map[i] for i in _s_header_to_port_idxs(s)) for s in s_headers

gplugins/common/utils/tests/test_get_component_with_new_port_layers.py

@@ -21,9 +21,9 @@ def test_component_with_new_port_layers() -> None:
     layernames_after = set(layer_stack.layers.keys())
 
     # Check we have two new layers in the LayerStack
-    assert (
-        len(layernames_after - layernames_before) == 2
-    ), "Two new layers should be added to the LayerStack"
+    assert len(layernames_after - layernames_before) == 2, (
+        "Two new layers should be added to the LayerStack"
+    )
 
     # Check we have one new layer in Component (all metal3 is removed by these operations)
     # assert len(new_component.get_layers()) == len(original_component.get_layers()) + 1

gplugins/devsim/get_simulation_xsection.py

@@ -306,7 +306,7 @@ def set_net_doping(self, device) -> None:
             device,
             "slab",
             "Acceptors",
-            f"{self.p_conc:1.3e}*step({-1*self.p_offset / cm:1.3e}-x) + {self.ppp_conc:1.3e}*step({self.xppp / cm:1.3e}-x)",
+            f"{self.p_conc:1.3e}*step({-1 * self.p_offset / cm:1.3e}-x) + {self.ppp_conc:1.3e}*step({self.xppp / cm:1.3e}-x)",
         )
         model_create.CreateNodeModel(
             device,
@@ -319,7 +319,7 @@ def set_net_doping(self, device) -> None:
             device,
             "core",
             "Acceptors",
-            f"{self.p_conc:1.1e}*step({-1*self.p_offset / cm:1.6e}-x)",
+            f"{self.p_conc:1.1e}*step({-1 * self.p_offset / cm:1.6e}-x)",
         )
         model_create.CreateNodeModel(
             device,

gplugins/elmer/get_capacitance.py

@@ -153,7 +153,7 @@ def _read_elmer_results(
                 field_file_location=simulation_folder
                 / raw_name
                 / "results"
-                / f'{raw_name}_t0001.{"pvtu" if n_processes > 1 else "vtu"}',
+                / f"{raw_name}_t0001.{'pvtu' if n_processes > 1 else 'vtu'}",
             )
         ),
     )

gplugins/fdtdz/get_sparameters_fdtdz.py

@@ -98,9 +98,9 @@ def get_sparameters_fdtdz(
 
     optical_port_names = list(component_ref.get_ports_dict(port_type="optical").keys())
 
-    assert isinstance(
-        component, Component
-    ), f"component needs to be a gf.Component, got Type {type(component)}"
+    assert isinstance(component, Component), (
+        f"component needs to be a gf.Component, got Type {type(component)}"
+    )
 
     component_extended = (
         gf.components.extension.extend_ports(

gplugins/gmeep/get_simulation.py

@@ -158,9 +158,9 @@ def get_simulation(
         port_source_name = port_source.name
         warnings.warn(f"Selecting port_source_name={port_source_name!r} instead.")
 
-    assert isinstance(
-        component, Component
-    ), f"component needs to be a gf.Component, got Type {type(component)}"
+    assert isinstance(component, Component), (
+        f"component needs to be a gf.Component, got Type {type(component)}"
+    )
 
     component_extended = (
         gf.c.extend_ports(

gplugins/gmsh/parse_component.py

@@ -88,7 +88,7 @@ def process_buffers(layer_polygons_dict: dict, layer_stack: LayerStack):
                     )
                     extended_layer_polygons_dict[f"{layername}_{poly_ind}_{z}"] = (
                         f"{layername}",
-                        f"{layername}_{poly_ind}_{zs[z_ind+1]}",
+                        f"{layername}_{poly_ind}_{zs[z_ind + 1]}",
                         polygon.buffer(width_buffer),
                         polygon.buffer(width_buffers[z_ind + 1]),
                     )

gplugins/klayout/drc/write_drc.py

@@ -121,7 +121,7 @@ def check_not_inside(
     """
     if size is None:
         error = f"{layer} not inside {not_inside}"
-        return f"{layer}.not_inside({not_inside})" f".output({error!r}, {error!r})"
+        return f"{layer}.not_inside({not_inside}).output({error!r}, {error!r})"
     else:
         error = f"{layer} sized by {size} not inside {not_inside}"
         script = f"{layer}_sized = {layer}.size({size})\n "

gplugins/klayout/tests/test_global_density.py

@@ -105,6 +105,6 @@ def test_estimate_weighted_global_density(
     estimated_density = estimate_weighted_global_density(
         Xi=Xi, Yi=Yi, Zi=Zi, bbox=get_gds_bbox(gdspath)
     )
-    assert np.isclose(
-        estimated_density, expected_global_density
-    ), f"{estimated_density=}, {expected_global_density=}"
+    assert np.isclose(estimated_density, expected_global_density), (
+        f"{estimated_density=}, {expected_global_density=}"
+    )

gplugins/lumerical/interconnect.py

@@ -404,14 +404,14 @@ def run_wavelength_sweep(
         session.connect(ona.name, "output", component.name, name)
     for i, port in enumerate(ports_out.keys()):
         name = port if is_top_level else f"{port}.{ports_out[port]}"
-        session.connect(ona.name, f"input {i+1}", component.name, name)
+        session.connect(ona.name, f"input {i + 1}", component.name, name)
 
     session.run()
 
     # inc.close()
     return {
         result: {
-            port: session.getresult(ona.name, f"input {i+1}/mode {mode}/{result}")
+            port: session.getresult(ona.name, f"input {i + 1}/mode {mode}/{result}")
             for i, port in enumerate(ports_out)
         }
         for result in results

gplugins/lumerical/tests/test_netlist_get_routes.py

@@ -48,9 +48,9 @@ def mock_get_connections(instances, mapping):
 
     routes = get_routes(instances, mapping, layers, True)
     assert "electrical_bundle_00" not in routes
-    assert all(
-        "electrical" not in key for key in routes.keys()
-    ), "Electrical routes should be ignored"
+    assert all("electrical" not in key for key in routes.keys()), (
+        "Electrical routes should be ignored"
+    )
 
 
 # def test_electrical_routing_with_parameters(setup_routing_data):

gplugins/lumerical/write_sparameters_lumerical.py

@@ -274,8 +274,7 @@ def write_sparameters_lumerical(
     ]
     if not layers_thickness:
         raise ValueError(
-            f"no layers for component {component.layers}"
-            f"in layer stack {layer_stack}"
+            f"no layers for component {component.layers}in layer stack {layer_stack}"
         )
     layers_zmin = [
         layer_to_zmin[layer]
@@ -300,7 +299,7 @@ def write_sparameters_lumerical(
     )
 
     logger.info(
-        f"Simulation size = {x_span*1e6:.3f}, {y_span*1e6:.3f}, {z_span*1e6:.3f} um"
+        f"Simulation size = {x_span * 1e6:.3f}, {y_span * 1e6:.3f}, {z_span * 1e6:.3f} um"
     )
 
     # from pprint import pprint
@@ -393,7 +392,7 @@ def write_sparameters_lumerical(
         zspan = 2 * ss.port_margin + thickness
 
         s.addport()
-        p = f"FDTD::ports::port {i+1}"
+        p = f"FDTD::ports::port {i + 1}"
         s.setnamed(p, "x", port.dx * 1e-6)
         s.setnamed(p, "y", port.dy * 1e-6)
         s.setnamed(p, "z", z * 1e-6)

gplugins/photonic_circuit_models/ring.py

@@ -66,7 +66,7 @@ def ring(
             coupling=coupling,
             loss=loss,
         )
-        plt.plot(wl, p, label=f"{int(width*1e3)}nm")
+        plt.plot(wl, p, label=f"{int(width * 1e3)}nm")
 
     # for thickness, ng in zip(thicknesses, ngs):
     #     p = ring(

gplugins/sax/models.py

@@ -367,7 +367,7 @@ def _mmi_nxn(
                 splitting_matrix[i][j]
             )  # Convert power ratio to amplitude
             loss_factor = 10 ** (-loss_dB[j] / 20)
-            S[(f"o{i+1}", f"o{j+1}")] = amplitude * loss_factor
+            S[(f"o{i + 1}", f"o{j + 1}")] = amplitude * loss_factor
 
     return sax.reciprocal(S)
 

gplugins/sentaurus/sprocess.py

@@ -309,7 +309,7 @@ def write_sprocess(
                         )
                     if split_steps:
                         f.write(
-                            f"struct tdr={relative_save_directory!s}/{struct_prefix}{i+1}_{step.name}_litho.tdr\n"
+                            f"struct tdr={relative_save_directory!s}/{struct_prefix}{i + 1}_{step.name}_litho.tdr\n"
                         )
 
             if isinstance(step, Etch):
@@ -350,7 +350,7 @@ def write_sprocess(
 
             if split_steps:
                 f.write(
-                    f"struct tdr={relative_save_directory!s}/{struct_prefix}{i+1}_{step.name}.tdr"
+                    f"struct tdr={relative_save_directory!s}/{struct_prefix}{i + 1}_{step.name}.tdr"
                 )
 
             f.write("\n")
@@ -632,7 +632,7 @@ def cut_tdr(
     )
 
     contact_str = f"""contact name=cathode aluminum silicon xlo=0.0 xhi=0.2 ylo=0.0 yhi=1 zlo=0 zhi=0
-contact name=anode aluminum silicon xlo=0.0 xhi=0.2 ylo={c.dysize-1:1.3f} yhi={c.dysize:1.3f} zlo=0 zhi=0
+contact name=anode aluminum silicon xlo=0.0 xhi=0.2 ylo={c.dysize - 1:1.3f} yhi={c.dysize:1.3f} zlo=0 zhi=0
 contact name=substrate box silicon xlo=4.2 xhi=4.3 ylo=0.0 yhi={c.dysize:1.3f} zlo=0 zhi=0
     """
 

gplugins/spice/spice_to_yaml.py

@@ -834,13 +834,13 @@ def get_ports(netlist: str, instances: list, model: dict, mapping: dict) -> dict
             # Ex. [a,o1: b,o1] is same as [b,o1: a,o1]; remove this permutation
             if (
                 "$" not in inst1["nets"][i]
-                and f'{inst1["name"]},{inst1["ports"][i]}' not in connections
+                and f"{inst1['name']},{inst1['ports'][i]}" not in connections
             ):
-                side1 = f'{inst1["name"]},{inst1["ports"][i]}'
+                side1 = f"{inst1['name']},{inst1['ports'][i]}"
                 connections.append(side1)
 
                 # Map instance port name to layout port name
-                side1 = f'{inst1["name"]},{mapping[inst1["model"]]["ports"][inst1["ports"][i]]}'
+                side1 = f"{inst1['name']},{mapping[inst1['model']]['ports'][inst1['ports'][i]]}"
 
                 j = ctk_ports.index(inst1["nets"][i])
                 ports[model["ports"][j]] = side1

gplugins/tidy3d/types.py

@@ -9,9 +9,9 @@
 # Function to validate the medium
 def validate_medium(v):
     # Check if the input is an instance of td.Medium
-    assert isinstance(
-        v, td.AbstractMedium
-    ), f"Input should be a tidy3d medium, but got {type(v)} instead"
+    assert isinstance(v, td.AbstractMedium), (
+        f"Input should be a tidy3d medium, but got {type(v)} instead"
+    )
     return v
 
 

gplugins/vlsir/tests/test_vlsir.py

@@ -29,9 +29,9 @@ def test_kdb_vlsir(pkg) -> None:
     assert pkg is not None, "Package should not be None"
     assert len(pkg.modules) == 3, "Expected 3 modules in the package"
     for i in range(3):
-        assert (
-            pkg.modules[i].name == packages[i]
-        ), f"Module[{i}] name should be {packages[i]}"
+        assert pkg.modules[i].name == packages[i], (
+            f"Module[{i}] name should be {packages[i]}"
+        )
 
 
 @pytest.mark.parametrize("spice_format", ["spice", "spectre", "xyce", "verilog"])

notebooks/workflow_2_ring.ipynb

@@ -96,7 +96,7 @@
     "            coupling=coupling,\n",
     "            loss=loss,\n",
     "        )\n",
-    "        plt.plot(wl, p, label=f\"{int(width*1e3)}nm\")\n",
+    "        plt.plot(wl, p, label=f\"{int(width * 1e3)}nm\")\n",
     "\n",
     "    plt.title(\"ring resonator vs waveguide width\")\n",
     "    plt.xlabel(\"wavelength (um)\")\n",