Merge pull request #1408 from mvdbeek/pretty_print_test_init

pretty-print workflow and use correct version of linked workflow

planemo/galaxy/workflows.py

@@ -312,10 +312,9 @@ def get_workflow_from_invocation_id(invocation_id, galaxy_url, galaxy_api_key):
     workflow_id = user_gi.invocations.show_invocation(invocation_id)["workflow_id"]
     workflow = user_gi.workflows._get(workflow_id, params={"instance": "true"})
     workflow_name = "-".join(workflow["name"].split())
-    user_gi.workflows.export_workflow_to_local_path(
-        use_default_filename=False, file_local_path=f"./{workflow_name}.ga", workflow_id=workflow["id"]
-    )
-
+    export_dict = user_gi.workflows.export_workflow_dict(workflow_id=workflow["id"], version=workflow["version"])
+    with open(f"{workflow_name}.ga", "w") as workflow_out:
+        json.dump(export_dict, workflow_out, indent=4)
     return workflow_name