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Releases: galantelab/sandy

v0.25

28 Nov 22:15
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  • Remove version from transcript_id, example: ENST00006666.9 will become ENST00006666

v0.24

28 Nov 22:13
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  • When running 'sandy transcriptome' save transcript counts and gene counts into separated files
  • Use GNU/GSL RNG and Randist for randlux algorithm
  • Update db.sqlite3 with GTEXv8 expression patterns
  • Enable persistent storage of sandy db in docker
  • Uppercase all FASTA bases
  • Apply NNN blacklist filter

v0.23

10 Mar 20:49
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Fix database permissions

v0.22

20 Dec 19:31
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v0.22

v0.21

19 Sep 05:16
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  • Set expression-matrix as optional
  • Fix bash/zsh completion installation
  • Distinguish count file between genome (coverage) and transcriptome (abundance)
  • Add compression level option
  • Set minimum perl version to 5.014

Implement structural variation

11 Aug 00:16
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  • Implement structural variation
  • Add variation database
  • Add bash/zsh completions

v0.18

06 May 05:40
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v0.18

Sandy was born

06 May 02:09
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v0.17

v0.17