Allow epochs to be specified as redshifts in the outputTimesUniformSpacingInTime class
#743
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: 'CI/CD' | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| branches: | |
| - 'master' | |
| paths: | |
| - 'Makefile' | |
| - 'source/**' | |
| - 'source/Bivar/**' | |
| - 'source/ISO_Varying_String/**' | |
| - 'source/gslODEInitVal2/**' | |
| - 'source/NSWC/**' | |
| - 'source/pFq/**' | |
| - 'source/gslSpecFuncApprox/**' | |
| - 'source/FFTlog/**' | |
| - 'perl/**' | |
| - 'perl/File/**' | |
| - 'perl/Galacticus/**' | |
| - 'perl/Galacticus/Launch/**' | |
| - 'perl/Galacticus/Constraints/**' | |
| - 'perl/Galacticus/Build/**' | |
| - 'perl/Galacticus/Build/Components/**' | |
| - 'perl/Galacticus/Build/Components/Classes/**' | |
| - 'perl/Galacticus/Build/Components/Implementations/**' | |
| - 'perl/Galacticus/Build/Components/Properties/**' | |
| - 'perl/Galacticus/Build/Components/TreeNodes/**' | |
| - 'perl/Galacticus/Build/Components/Hierarchy/**' | |
| - 'perl/Galacticus/Build/SourceTree/**' | |
| - 'perl/Galacticus/Build/SourceTree/Parse/**' | |
| - 'perl/Galacticus/Build/SourceTree/Analyze/**' | |
| - 'perl/Galacticus/Build/SourceTree/Process/**' | |
| - 'perl/Galacticus/Build/SourceTree/Process/FunctionClass/**' | |
| - 'perl/List/**' | |
| - 'perl/Sort/**' | |
| - 'perl/LaTeX/**' | |
| - 'perl/IO/**' | |
| - 'perl/IO/Compress/**' | |
| - 'perl/System/**' | |
| - 'perl/Fortran/**' | |
| - 'scripts/build/**' | |
| - 'schema/**' | |
| concurrency: | |
| group: cicd-${{ github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| # Build and deploy | |
| ## Linux | |
| ### Static executable and test codes | |
| Build-Executable-Linux: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_FCFLAGS=$GALACTICUS_FCFLAGS -static" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Build the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| export BUILDPATH=./work/build | |
| set -o pipefail | |
| make GALACTICUS_BUILD_OPTION=compileprof -j4 all 2>&1 | tee build.log | |
| set +o pipefail | |
| chmod u=wrx ./scripts/build/buildProfiler.pl | |
| ./scripts/build/buildProfiler.pl build.log buildProfile.html --durationMinimum 20 | |
| ! grep -n Error: build.log | |
| ! grep -n Warning: build.log | |
| ! grep -v 'is up to date' build.log | grep -n -C 5 make: | |
| - name: Upload Galacticus executable | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: galacticus-exec | |
| path: 'Galacticus.exe' | |
| - name: Upload test code executables | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-execs | |
| path: 'tests.*.exe' | |
| - name: Upload build profile | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: build-profile | |
| path: 'buildProfile.html' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Non-static executable | |
| Build-Executable-Linux-Non-Static: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Build the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| export BUILDPATH=./work/build | |
| set -o pipefail | |
| make -j4 Galacticus.exe 2>&1 | tee build.log | |
| set +o pipefail | |
| ! grep -n Error: build.log | |
| ! grep -n Warning: build.log | |
| ! grep -v 'is up to date' build.log | grep -n -C 5 make: | |
| - name: Upload Galacticus executable | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: galacticus-exec-non-static | |
| path: 'Galacticus.exe' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Executable instrumented | |
| Build-Executables-Instrumented-Linux: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Build the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| export GALACTICUS_FCFLAGS="$GALACTICUS_FCFLAGS -pg" | |
| export GALACTICUS_CFLAGS="$GALACTICUS_CFLAGS -pg" | |
| export GALACTICUS_CPPFLAGS="$GALACTICUS_CPPFLAGS -pg" | |
| make -j4 Galacticus.exe | |
| - name: Upload executables | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: galacticus-exec-instrumented | |
| path: 'Galacticus.exe' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Executable MPI | |
| Build-Executables-MPI-Linux: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Build the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| make -j4 GALACTICUS_BUILD_OPTION=MPI Galacticus.exe tests.MPI.exe tests.radiative_transfer.atomic_matter.state_solver.exe | |
| - name: Upload Galacticus executable | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: galacticus-exec-MPI | |
| path: 'Galacticus.exe' | |
| - name: Upload test code executables | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-execs-MPI | |
| path: 'tests.*.exe' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Executable debugging | |
| Build-Executables-Debugging-Linux: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_FCFLAGS+=\ -DDEBUGGING" >> $GITHUB_ENV | |
| - name: Build the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| make -j4 Galacticus.exe tests.debugging.exe | |
| - name: Upload test code executables | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-execs-debugging | |
| path: 'tests.*.exe' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Library | |
| Build-Library-Linux: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| - name: Build the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| make -j4 GALACTICUS_BUILD_OPTION=lib libgalacticus.so | |
| - name: Package the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| mkdir galacticus | |
| mkdir galacticus/lib | |
| mkdir galacticus/python | |
| # Find all dynamic libraries needed (filtering out some system libs) and copy to our folder. | |
| ldd libgalacticus.so | awk '{if (NF == 4) print $3}' | grep -v -e /libc.so -e /libdl.so -e /libm.so -e /libpthread.so -e /librt.so | xargs -n 1 -i{} cp {} galacticus/lib/ | |
| mv galacticus.py galacticus/python/ | |
| mv libgalacticus.so galacticus/lib/ | |
| tar cvfj libgalacticus.tar.bz2 galacticus | |
| - name: Upload library | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: galacticus-library | |
| path: 'libgalacticus.tar.bz2' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Docker image | |
| Build-Docker-Linux: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| packages: write | |
| steps: | |
| - name: "Detect PR build" | |
| id: detectBranch | |
| run: | | |
| if [[ "${{ github.event_name }}" == "pull_request" ]]; then | |
| echo Running on a PR - will build, but not push | |
| echo "doPush=false" >> "$GITHUB_OUTPUT" | |
| else | |
| echo Running on a non-PR - will build and push | |
| echo "doPush=true" >> "$GITHUB_OUTPUT" | |
| fi | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract metadata (tags, labels) for Docker | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: galacticusorg/galacticus | |
| - name: Build and push Docker image | |
| uses: docker/build-push-action@v5 | |
| with: | |
| push: ${{ steps.detectBranch.outputs.doPush }} | |
| tags: ghcr.io/galacticusorg/galacticus:latest | |
| labels: ${{ steps.meta.outputs.labels }} | |
| ### Documentation | |
| Build-Documentation-Linux: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| - name: Build the docs | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| ./scripts/doc/Build_Documentation.sh -f yes -p 2 | |
| - name: Upload docs | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: galacticus-docs | |
| path: | | |
| ./doc/Galacticus_Usage.pdf | |
| ./doc/Galacticus_Physics.pdf | |
| ./doc/Galacticus_Development.pdf | |
| ./doc/Galacticus_Source.pdf | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Tools | |
| Build-Tools: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_FCFLAGS+=\ -static" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: galacticus-exec | |
| - name: Build tools | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| mkdir -p $GALACTICUS_DATA_PATH/dynamic | |
| chmod u=wrx ./Galacticus.exe | |
| ./Galacticus.exe parameters/buildTools.xml | |
| cd $GALACTICUS_DATA_PATH | |
| classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| tar cfj tools.tar.bz2 \ | |
| dynamic/CAMB-${cambVersion}/fortran/camb \ | |
| dynamic/AxionCAMB/camb \ | |
| dynamic/class_public-${classVersion}/class \ | |
| dynamic/RecFast/recfast.exe \ | |
| dynamic/RecFast/currentVersion \ | |
| dynamic/c${cloudyVersion}/source/cloudy.exe \ | |
| dynamic/c${cloudyVersion}/data \ | |
| dynamic/fsps-${fspsVersion}/src/autosps.exe \ | |
| dynamic/fsps-${fspsVersion}/dust \ | |
| dynamic/fsps-${fspsVersion}/data \ | |
| dynamic/fsps-${fspsVersion}/nebular \ | |
| dynamic/fsps-${fspsVersion}/SPECTRA \ | |
| dynamic/fsps-${fspsVersion}/OUTPUTS \ | |
| dynamic/fsps-${fspsVersion}/ISOCHRONES | |
| - name: Upload tools | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: galacticus-tools | |
| path: ./datasets/tools.tar.bz2 | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ## MacOS | |
| ### Static executable | |
| Build-Executable-MacOS: | |
| runs-on: macos-11 | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: Set up build environment | |
| uses: ./.github/actions/buildMacOS | |
| - name: Build Galacticus | |
| run: | | |
| set -o pipefail | |
| make -j3 Galacticus.exe tests.hashes.cryptographic.exe 2>&1 | tee build.log | |
| ./scripts/build/staticRelinker.pl `grep '\-o Galacticus.exe' build.log` | |
| ./scripts/build/staticRelinker.pl `grep '\-o tests.hashes.cryptographic.exe' build.log` | |
| dsymutil -o Galacticus.exe.dSYM Galacticus.exe | |
| zip -r debugSymbolsMacOS.zip Galacticus.exe.dSYM | |
| mv Galacticus.exe Galacticus_MacOS.exe | |
| - name: Upload Galacticus executable | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: galacticus-exec-MacOS | |
| path: 'Galacticus_MacOS.exe' | |
| - name: Upload test code executables | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-execs-MacOS | |
| path: 'tests.*.exe' | |
| - name: Upload Galacticus debug symbols | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: galacticus-debug-MacOS | |
| path: 'debugSymbolsMacOS.zip' | |
| ## Library | |
| Build-Library-MacOS: | |
| runs-on: macos-11 | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: Set up build environment | |
| uses: ./.github/actions/buildMacOS | |
| - name: Build Galacticus | |
| run: | | |
| make -j3 GALACTICUS_BUILD_OPTION=lib libgalacticus.so | |
| - name: Package the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| mkdir galacticus | |
| mkdir galacticus/lib | |
| mkdir galacticus/python | |
| # Find all dynamic libraries needed (filtering out any non-"local" ones) and copy to our folder. | |
| otool -L libgalacticus.so | awk '{if (NR > 1) print $1}' | grep -e /usr/local -e /opt/local | xargs -n 1 -I{} cp {} galacticus/lib/ | |
| mv galacticus.py galacticus/python/ | |
| mv libgalacticus.so galacticus/lib/ | |
| zip -r libgalacticusMacOS.zip galacticus | |
| - name: Upload library | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: galacticus-library-MacOS | |
| path: 'libgalacticusMacOS.zip' | |
| ### Tools | |
| Build-Tools-MacOS: | |
| runs-on: macos-11 | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: Set up build environment | |
| uses: ./.github/actions/buildMacOS | |
| - name: Build Galacticus | |
| run: | | |
| make -j3 Galacticus.exe | |
| - name: Build tools | |
| run: | | |
| export GALACTICUS_EXEC_PATH=`pwd` | |
| export FCCOMPILER=gfortran-11 | |
| export CCOMPILER=gcc-11 | |
| export CPPCOMPILER=g++-11 | |
| export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib" | |
| export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include" | |
| export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include" | |
| classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| mkdir -p $GALACTICUS_DATA_PATH/dynamic | |
| set -o pipefail | |
| ./Galacticus.exe parameters/buildTools.xml 2>&1 | tee build.log | |
| cd $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion}/fortran/ | |
| $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 -cpp -Ofast -fopenmp -fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib -JRelease -IRelease/ -I"/Users/runner/work/galacticus/galacticus/datasets/dynamic/CAMB-${cambVersion}/fortran/../forutils/Release/" Release/inidriver.o Release/libcamb.a -L"/Users/runner/work/galacticus/galacticus/datasets/dynamic/CAMB-${cambVersion}/fortran/../forutils/Release/" -lforutils -o camb | |
| cd $GALACTICUS_DATA_PATH/dynamic/AxionCAMB/ | |
| $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 -O3 -fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib constants.o utils.o subroutines.o inifile.o power_tilt.o recfast_axion.o reionization.o modules.o bessels.o equations_ppf.o halofit_ppf.o lensing.o SeparableBispectrum.o cmbmain.o camb.o axion_background.o inidriver_axion.F90 -o camb | |
| cd $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion}/ | |
| $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o class ' $GALACTICUS_EXEC_PATH/build.log` | |
| cd $GALACTICUS_DATA_PATH/dynamic/RecFast/ | |
| $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 recfast.for -o recfast.exe -O3 -ffixed-form -ffixed-line-length-none | |
| cd $GALACTICUS_DATA_PATH/dynamic/c${cloudyVersion}/source/ | |
| $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o cloudy.exe' $GALACTICUS_EXEC_PATH/build.log` | |
| cd $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion}/src | |
| $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o autosps.exe' $GALACTICUS_EXEC_PATH/build.log` | |
| cd $GALACTICUS_DATA_PATH | |
| zip -r toolsMacOS.zip \ | |
| dynamic/CAMB-${cambVersion}/fortran/camb \ | |
| dynamic/AxionCAMB/camb \ | |
| dynamic/class_public-${classVersion}/class \ | |
| dynamic/RecFast/recfast.exe \ | |
| dynamic/RecFast/currentVersion \ | |
| dynamic/c${cloudyVersion}/source/cloudy.exe \ | |
| dynamic/c${cloudyVersion}/data \ | |
| dynamic/fsps-${fspsVersion}/src/autosps.exe \ | |
| dynamic/fsps-${fspsVersion}/dust \ | |
| dynamic/fsps-${fspsVersion}/data \ | |
| dynamic/fsps-${fspsVersion}/nebular \ | |
| dynamic/fsps-${fspsVersion}/SPECTRA \ | |
| dynamic/fsps-${fspsVersion}/OUTPUTS \ | |
| dynamic/fsps-${fspsVersion}/ISOCHRONES | |
| - name: Upload Galacticus executable | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: galacticus-tools-MacOS | |
| path: './datasets/toolsMacOS.zip' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| # Benchmarks | |
| Benchmark-Dark-Matter-Only-Subhalos: | |
| needs: Build-Executable-Linux | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: benchmark-darkMatterOnlySubhalos.pl | |
| artifact: galacticus-exec | |
| runPath: ./testSuite | |
| cacheData: 0 | |
| install: time | |
| uploadFile: testSuite/outputs/benchmark_darkMatterOnlySubhalos.json | |
| uploadName: benchmark-darkMatterOnlySubhalos | |
| secrets: inherit | |
| Benchmark-Milky-Way-Model: | |
| needs: Build-Executable-Linux | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: benchmark-milkyWay.pl | |
| artifact: galacticus-exec | |
| runPath: ./testSuite | |
| cacheData: 1 | |
| install: time | |
| uploadFile: testSuite/outputs/benchmark_milkyWay.json | |
| uploadName: benchmark-milkyWay | |
| secrets: inherit | |
| # Profiling | |
| Profile-Dark-Matter-Only-Subhalos: | |
| needs: Build-Executable-Linux | |
| uses: ./.github/workflows/profile.yml | |
| with: | |
| profiler: perf | |
| cacheData: 0 | |
| name: darkMatterOnlySubHalos | |
| frequency: 500 | |
| secrets: inherit | |
| Profile-Milky-Way-Model: | |
| needs: Build-Executable-Linux | |
| uses: ./.github/workflows/profile.yml | |
| with: | |
| profiler: perf | |
| cacheData: 1 | |
| name: milkyWay | |
| frequency: 100 | |
| secrets: inherit | |
| Profile-Milky-Way-SIDM-Model: | |
| needs: Build-Executable-Linux | |
| uses: ./.github/workflows/profile.yml | |
| with: | |
| profiler: perf | |
| cacheData: 1 | |
| name: milkyWay_SIDM | |
| frequency: 100 | |
| secrets: inherit | |
| Profile-Dark-Matter-Only-Subhalos-GProf: | |
| needs: Build-Executables-Instrumented-Linux | |
| uses: ./.github/workflows/profile.yml | |
| with: | |
| profiler: gprof | |
| cacheData: 0 | |
| name: darkMatterOnlySubHalos | |
| secrets: inherit | |
| Profile-Milky-Way-GProf: | |
| needs: Build-Executables-Instrumented-Linux | |
| uses: ./.github/workflows/profile.yml | |
| with: | |
| profiler: gprof | |
| cacheData: 1 | |
| name: milkyWay | |
| Profile-Milky-Way-SIDM-GProf: | |
| needs: Build-Executables-Instrumented-Linux | |
| uses: ./.github/workflows/profile.yml | |
| with: | |
| profiler: gprof | |
| cacheData: 1 | |
| name: milkyWay_SIDM | |
| # Validation | |
| Validate-Dark-Matter-Only-Subhalos: | |
| needs: Build-Executable-Linux | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: validate-darkMatterOnlySubhalos.pl | |
| artifact: galacticus-exec | |
| runPath: ./testSuite | |
| cacheData: 0 | |
| uploadFile: ./testSuite/outputs/*.json | |
| uploadName: validation-darkMatterOnlySubhalos | |
| secrets: inherit | |
| Validate-Milky-Way-Model: | |
| needs: Build-Executable-Linux | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: validate-milkyWay.pl | |
| artifact: galacticus-exec | |
| runPath: ./testSuite | |
| cacheData: 1 | |
| uploadFile: ./testSuite/outputs/*.json | |
| uploadName: validation-milkyWayModel | |
| secrets: inherit | |
| # Tests | |
| ## Linux | |
| ### Test Codes | |
| Codes: | |
| needs: Build-Executable-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| executable: [ tests.nodes.exe, | |
| tests.parameters.exe, | |
| tests.files.exe, | |
| tests.IO.HDF5.exe, | |
| tests.IO.XML.exe, | |
| tests.ODE_solver.exe, | |
| tests.random.exe, | |
| tests.random.quasi.exe, | |
| tests.arrays.exe, | |
| tests.meshes.exe, | |
| tests.convex_hulls.exe, | |
| tests.comparisons.exe, | |
| tests.geometry.coordinate_systems.exe, | |
| tests.hashes.exe, | |
| tests.hashes.perfect.exe, | |
| tests.regular_expressions.exe, | |
| tests.hashes.cryptographic.exe, | |
| tests.integration.exe, | |
| tests.integration2.exe, | |
| tests.differentiation.exe, | |
| tests.tables.exe, | |
| tests.interpolation.exe, | |
| tests.interpolation.2D.exe, | |
| tests.make_ranges.exe, | |
| tests.mass_distributions.exe, | |
| tests.math_special_functions.exe, | |
| tests.math_distributions.exe, | |
| tests.math.fast.exe, | |
| tests.math.arithmetic.exe, | |
| tests.math.linear_algebra.exe, | |
| tests.root_finding.exe, | |
| tests.multi_dimensional_minimizer.exe, | |
| tests.search.exe, | |
| tests.Roman_numerals.exe, | |
| tests.SI_prefixes.exe, | |
| tests.sort.exe, | |
| tests.sort.topological.exe, | |
| tests.string_utilities.exe, | |
| tests.vectors.exe, | |
| tests.multi_counters.exe, | |
| tests.tensors.exe, | |
| tests.cosmic_age.exe, | |
| tests.spherical_collapse.open.exe, | |
| tests.spherical_collapse.flat.exe, | |
| tests.spherical_collapse.dark_energy.EdS.exe, | |
| tests.spherical_collapse.dark_energy.open.exe, | |
| tests.spherical_collapse.dark_energy.lambda.exe, | |
| tests.spherical_collapse.dark_energy.constantEoSminusHalf.exe, | |
| tests.spherical_collapse.dark_energy.constantEoSminusTwoThirds.exe, | |
| tests.spherical_collapse.dark_energy.constantEoSminus0.6.exe, | |
| tests.spherical_collapse.dark_energy.constantEoSminus0.8.exe, | |
| tests.spherical_collapse.baryons_dark_matter.exe, | |
| tests.spherical_collapse.nonlinear.exe, | |
| tests.warm_dark_matter.exe, | |
| tests.linear_growth.cosmological_constant.exe, | |
| tests.linear_growth.EdS.exe, | |
| tests.linear_growth.open.exe, | |
| tests.linear_growth.dark_energy.exe, | |
| tests.linear_growth.baryons.EdS.exe, | |
| tests.halo_mass_function.Tinker.exe, | |
| tests.halo_mass_function.Reed2007.exe, | |
| tests.halo_mass_function.environment_averaged.exe, | |
| tests.comoving_distance.exe, | |
| tests.mass_accretion_history.Correa2015.exe, | |
| tests.Zhao2009_algorithms.dark_energy.exe, | |
| tests.Zhao2009_algorithms.EdS.exe, | |
| tests.Zhao2009_algorithms.open.exe, | |
| tests.NFW96_concentration.dark_energy.exe, | |
| tests.Prada2011_concentration.exe, | |
| tests.DiemerKravtsov2014_concentration.exe, | |
| tests.concentration.Correa2015.exe, | |
| tests.concentrations.exe, | |
| tests.biases.exe, | |
| tests.kepler_orbits.exe, | |
| tests.abundances.exe, | |
| tests.sigma.exe, | |
| tests.power_spectrum.primordial.exe, | |
| tests.power_spectrum.exe, | |
| tests.transfer_functions.exe, | |
| tests.black_hole_fundamentals.exe, | |
| tests.bug745815.exe, | |
| tests.gaunt_factors.exe, | |
| tests.cooling_functions.exe, | |
| tests.accretion_disks.exe, | |
| tests.mass_accretion_history.Hearin2021.exe, | |
| tests.mass_accretion_history.Hearin2021_stochastic.exe, | |
| tests.dark_matter_profiles.exe, | |
| tests.dark_matter_profiles.projected.exe, | |
| tests.dark_matter_profiles.adiabaticGnedin2004.exe, | |
| tests.dark_matter_profiles.heated.exe, | |
| tests.dark_matter_halo_radius_enclosing_mass.exe, | |
| tests.dark_matter_profiles.tidal_tracks.exe, | |
| tests.dark_matter_profiles.generic.exe, | |
| tests.dark_matter_profiles.finite_resolution.exe, | |
| tests.dark_matter_profiles.Zhao1996.exe, | |
| tests.spectra.postprocess.Inoue2014.exe, | |
| tests.recombination_computed.exe, | |
| tests.recombination_cooling.Hummer.exe, | |
| tests.locks.exe, | |
| tests.initial_mass_functions.exe, | |
| tests.stellar_populations.exe, | |
| tests.stellar_populations.luminosities.exe, | |
| tests.excursion_sets.exe, | |
| tests.merger_tree_branching.exe, | |
| tests.event_hooks.exe, | |
| tests.tree_branch_destroy.exe, | |
| tests.binary_search_trees.exe, | |
| tests.orbits.exe, | |
| tests.debugging.exe, | |
| tests.hashes.cryptographic.exe ] | |
| uses: ./.github/workflows/testCode.yml | |
| with: | |
| executable: ${{ matrix.executable }} | |
| artifact: test-execs | |
| secrets: inherit | |
| ### Test Crash | |
| Crash: | |
| needs: Build-Executable-Linux | |
| uses: ./.github/workflows/testCode.yml | |
| with: | |
| executable: tests.crash.exe | |
| artifact: test-execs | |
| expectCrash: 1 | |
| secrets: inherit | |
| ### Test Fail | |
| Fail: | |
| needs: Build-Executable-Linux | |
| uses: ./.github/workflows/testCode.yml | |
| with: | |
| executable: tests.fail.exe | |
| artifact: test-execs | |
| expectFail: 1 | |
| secrets: inherit | |
| ### MPI Test Codes | |
| Codes-MPI: | |
| needs: Build-Executables-MPI-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| executable: [ tests.MPI.exe, | |
| tests.radiative_transfer.atomic_matter.state_solver.exe ] | |
| uses: ./.github/workflows/testCode.yml | |
| with: | |
| executable: ${{ matrix.executable }} | |
| artifact: test-execs-MPI | |
| mpi: 1 | |
| secrets: inherit | |
| ### Debugging Test Codes | |
| Codes-Debugging: | |
| needs: Build-Executables-Debugging-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| executable: [ tests.debugging.exe ] | |
| uses: ./.github/workflows/testCode.yml | |
| with: | |
| executable: ${{ matrix.executable }} | |
| artifact: test-execs-debugging | |
| secrets: inherit | |
| ### Cosmology | |
| Cosmology: | |
| needs: Build-Executable-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| instance: [ "1:2", "2:2" ] | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: test-cosmology.pl | |
| artifact: galacticus-exec | |
| runPath: ./testSuite | |
| options: "--launchMethod local --threadMaximum 1 --ompThreads 4 --instance ${{ matrix.instance }}" | |
| secrets: inherit | |
| ### Mass Conservation | |
| Mass-Conservation: | |
| needs: Build-Executable-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| file: [ "test-mass-conservation-simple.pl", "test-mass-conservation-standard.pl", "test-mass-conservation-coldMode.pl" ] | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: ${{ matrix.file }} | |
| artifact: galacticus-exec | |
| runPath: ./testSuite | |
| options: "--launchMethod local --threadMaximum 1 --ompThreads 4" | |
| secrets: inherit | |
| ### Merger Trees | |
| Merger-Tree-Builder: | |
| needs: Build-Executable-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| instance: [ "1:4", "2:4", "3:4", "4:4" ] | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: test-merger-tree-builder.pl | |
| artifact: galacticus-exec | |
| runPath: ./testSuite | |
| options: "--launchMethod local --threadMaximum 1 --ompThreads 4 --instance ${{ matrix.instance }}" | |
| secrets: inherit | |
| Merger-Tree-Write: | |
| needs: Build-Executable-Linux | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: test-merger-tree-write.pl | |
| artifact: galacticus-exec | |
| runPath: ./testSuite | |
| options: "--launchMethod local --threadMaximum 1 --ompThreads 4" | |
| secrets: inherit | |
| ## Model Integration | |
| Model-Integration: | |
| needs: Build-Executable-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| instance: [ "1:2", "2:2" ] | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: test-model-integration.pl | |
| artifact: galacticus-exec | |
| runPath: ./testSuite | |
| options: "--launchMethod local --threadMaximum 1 --ompThreads 4 --instance ${{ matrix.instance }}" | |
| secrets: inherit | |
| ## Misc Models | |
| Miscellaneous: | |
| needs: Build-Executable-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| file: [ test-allowed-parameters.pl, | |
| test-bar-instability.pl, | |
| test-transfer-functions-axion.pl, | |
| test-mass-definitions.pl, | |
| test-Bolshoi-tree-builder.pl, | |
| test-branchlessTrees.pl, | |
| test-branchSubsampling.pl, | |
| test-CGM-mass-cooled.pl, | |
| test-concentration-Ludlow2016.pl, | |
| test-tidallyTruncatedNFWFit.pl, | |
| test-constraint-deterministic-spins.pl, | |
| test-constraint-mass-function.pl, | |
| test-extract-directives.pl, | |
| test-fortran-utils.pl, | |
| test-halo-mass-functions.pl, | |
| test-inactive_luminosities.pl, | |
| test-interoutput-star-formation-rate.pl, | |
| test-mass-host-maximum.pl, | |
| test-noninstantaneous-recycling.pl, | |
| test-satellite-distance-minimum.pl, | |
| test-treeFilterLabels.pl, | |
| test-Millennium-tree-builder.pl, | |
| test-output.pl, | |
| test-output-tree-contiguousity.pl, | |
| test-parameter-validation.pl, | |
| test-perl-modules.pl, | |
| test-reproducibility.pl, | |
| test-splitForests.pl, | |
| test-star-formation-histories-adaptive.py, | |
| test-stateRestore.pl, | |
| test-checkpointing.pl, | |
| test-stellar-mass-weighted-ages.pl, | |
| test-tidalTracks.pl, | |
| test-galacticStructureStateDeallocateBug.pl, | |
| test-inactiveNumerics.pl, | |
| test-impulsiveHeating.pl, | |
| test-haloTriaxiality.pl, | |
| test-parallelTreeBuild.pl ] | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: ${{ matrix.file }} | |
| artifact: galacticus-exec | |
| runPath: ./testSuite | |
| secrets: inherit | |
| Miscellaneous-Deep: | |
| needs: Build-Executable-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| file: [ test-parameter-migration.pl ] | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| fetchDepth: 0 | |
| file: ${{ matrix.file }} | |
| artifact: galacticus-exec | |
| runPath: ./testSuite | |
| secrets: inherit | |
| Miscellaneous-Cached: | |
| needs: Build-Executable-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| file: [ test-constrained-merger-trees.pl ] | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: ${{ matrix.file }} | |
| artifact: galacticus-exec | |
| cacheData: 1 | |
| runPath: ./testSuite | |
| secrets: inherit | |
| Miscellaneous-Models: | |
| needs: Build-Executable-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| file: [ testSuite/parameters/mergerTreeEvolverThreaded.xml ] | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: ${{ matrix.file }} | |
| artifact: galacticus-exec | |
| secrets: inherit | |
| ### Outputs | |
| Outputs: | |
| needs: Build-Executable-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| instance: [ "1:10", "2:10", "3:10", "4:10", "5:10", "6:10", "7:10", "8:10", "9:10", "10:10" ] | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: test-outputs.pl | |
| artifact: galacticus-exec | |
| runPath: ./testSuite | |
| options: "--launchMethod local --threadMaximum 1 --ompThreads 4 --instance ${{ matrix.instance }}" | |
| secrets: inherit | |
| ### Regressions | |
| Regressions: | |
| needs: Build-Executable-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| file: [ testSuite/regressions/bug1066052.pl, | |
| testSuite/regressions/adaptiveSFHLengths.py, | |
| testSuite/regressions/mergerTreeBoxSizeWeight.pl, | |
| testSuite/regressions/satellitePresetBoundMassNonZero.pl, | |
| testSuite/regressions/setProperties.pl, | |
| testSuite/regressions/cosmicEmu.pl, | |
| testSuite/regressions/bug1053153.xml, | |
| testSuite/regressions/bug711424.xml, | |
| testSuite/regressions/bug725315.xml, | |
| testSuite/regressions/coincidentMergerAndBranchJump.xml, | |
| testSuite/regressions/deadlockMergeTargetInDescendentOfMergee2.xml, | |
| testSuite/regressions/deadlockMergeTargetInDescendentOfMergee.xml, | |
| testSuite/regressions/finalTimeBeforeOutputTime.xml, | |
| testSuite/regressions/immediateSubSubMergerThenBranchJump.xml, | |
| testSuite/regressions/initialSatelliteNoPrimaryProgenitor.xml, | |
| testSuite/regressions/linearGrowthForFutureModel.xml, | |
| testSuite/regressions/ludlowScaleSetBeforeTreeInitialization.xml, | |
| testSuite/regressions/mergerAtFinalTimeInTree.xml, | |
| testSuite/regressions/particulate.xml, | |
| testSuite/regressions/subhaloMergesAtFinalTimeOfTree.xml, | |
| testSuite/regressions/subhaloTwoConsecutiveMergers.xml, | |
| testSuite/regressions/treeWithInitialSatelliteInProgenitorlessHost.xml, | |
| testSuite/regressions/treeWithNoPrimaryProgenitor.xml, | |
| testSuite/regressions/outputRank2ExtendSegFault.xml, | |
| testSuite/regressions/barInstabilityFPE.xml ] | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: ${{ matrix.file }} | |
| artifact: galacticus-exec | |
| secrets: inherit | |
| Regressions-Cached: | |
| needs: Build-Executable-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| file: [ testSuite/regressions/cole2000TreeBuilderWDMNodeWellOrdering.xml, | |
| testSuite/regressions/issue142.xml ] | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: ${{ matrix.file }} | |
| artifact: galacticus-exec | |
| cacheData: 1 | |
| secrets: inherit | |
| ### Methods | |
| Methods: | |
| needs: Build-Executable-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| instance: [ "1:20", "2:20", "3:20", "4:20", "5:20", "6:20", "7:20", "8:20", "9:20", "10:20", "11:20", "12:20", "13:20", "14:20", "15:20", "16:20", "17:20", "18:20", "19:20", "20:20" ] | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: test-methods.pl | |
| artifact: galacticus-exec | |
| runPath: ./testSuite | |
| options: "--launchMethod local --threadMaximum 1 --ompThreads 4 --instance ${{ matrix.instance }}" | |
| secrets: inherit | |
| ### MPI Misc Models | |
| MPI-State-Restore: | |
| needs: Build-Executables-MPI-Linux | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: test-stateRestore_MPI.pl | |
| artifact: galacticus-exec-MPI | |
| runPath: ./testSuite | |
| options: --processesPerNode 8 --allow-run-as-root yes | |
| secrets: inherit | |
| MPI-Radiative-Transfer-Stromgren-Sphere: | |
| needs: Build-Executables-MPI-Linux | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: test-radiativeTransfer-StromgrenSphere_MPI.pl | |
| artifact: galacticus-exec-MPI | |
| runPath: ./testSuite | |
| options: --processesPerNode 4 --allow-run-as-root yes | |
| secrets: inherit | |
| MPI-MCMC: | |
| needs: Build-Executables-MPI-Linux | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: parameters/tutorials/mcmcConfig.xml | |
| artifact: galacticus-exec-MPI | |
| mpi: 1 | |
| processesPerNode: 4 | |
| secrets: inherit | |
| ### MPI Methods | |
| Methods-MPI: | |
| needs: Build-Executables-MPI-Linux | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| instance: [ "1:2", "2:2" ] | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| file: test-methods_MPI.pl | |
| artifact: galacticus-exec-MPI | |
| runPath: ./testSuite | |
| options: "--launchMethod local --threadMaximum 1 --ompThreads 1 --instance ${{ matrix.instance }}" | |
| secrets: inherit | |
| ### Memory leaks (non-MPI) | |
| Memory-Leaks: | |
| needs: Build-Executable-Linux-Non-Static | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| install: valgrind | |
| file: test-memory-leaks.pl | |
| artifact: galacticus-exec-non-static | |
| runPath: ./testSuite | |
| options: --mpi 0 | |
| secrets: inherit | |
| ### Memory leaks (MPI) | |
| Memory-Leaks-MPI: | |
| needs: Build-Executables-MPI-Linux | |
| uses: ./.github/workflows/testModel.yml | |
| with: | |
| install: valgrind | |
| file: test-memory-leaks.pl | |
| artifact: galacticus-exec-MPI | |
| runPath: ./testSuite | |
| options: --mpi 1 | |
| secrets: inherit | |
| ## Python Interface | |
| Python-Interface: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Library-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$GITHUB_WORKSPACE/galacticus/python" >> $GITHUB_ENV | |
| - name: Install Python2 | |
| run: | | |
| apt -y update && apt -y upgrade | |
| apt -y install python2.7 | |
| - name: Download library | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: galacticus-library | |
| - name: Test interface | |
| run: | | |
| tar xvfj libgalacticus.tar.bz2 | |
| python2.7 testSuite/test-Python-interface.py | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ## MacOS | |
| ### Test Codes | |
| Codes-MacOS: | |
| needs: Build-Executable-MacOS | |
| strategy: | |
| # Ensure all jobs are run, even if some fail. | |
| fail-fast: false | |
| matrix: | |
| executable: [ tests.hashes.cryptographic.exe ] | |
| uses: ./.github/workflows/testCode.yml | |
| with: | |
| runner: macos-11 | |
| executable: ${{ matrix.executable }} | |
| artifact: test-execs-MacOS | |
| secrets: inherit | |
| ### Test Python Interface | |
| Python-Interface-MacOS: | |
| runs-on: macos-11 | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$GITHUB_WORKSPACE/galacticus/python" >> $GITHUB_ENV | |
| echo "GALACTICUS_FCFLAGS=\"$GALACTICUS_FCFLAGS -fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib\"" >> $GITHUB_ENV | |
| echo "FCCOMPILER=gfortran-11" >> $GITHUB_ENV | |
| echo "CCOMPILER=gcc-11" >> $GITHUB_ENV | |
| echo "CPPCOMPILER=g++-11" >> $GITHUB_ENV | |
| echo "PATH=$PATH:/opt/local/bin:/usr/local/bin" >> $GITHUB_ENV | |
| echo "PERL_MM_USE_DEFAULT=1" >> $GITHUB_ENV | |
| - name: Install MacPorts | |
| run: | | |
| curl -L https://github.com/macports/macports-base/releases/download/v2.7.1/MacPorts-2.7.1-11-BigSur.pkg --output MacPorts-2.7.1-11-BigSur.pkg | |
| sudo installer -pkg ./MacPorts-2.7.1-11-BigSur.pkg -target / | |
| rm ./MacPorts-2.7.1-11-BigSur.pkg | |
| - name: Install guile | |
| run: sudo port install guile18 | |
| - name: Install libmatheval | |
| run: | | |
| curl -L https://github.com/galacticusorg/libmatheval/releases/download/latest/libmatheval-1.1.12.tar.gz --output libmatheval-1.1.12.tar.gz | |
| tar xvfz libmatheval-1.1.12.tar.gz | |
| cd libmatheval-1.1.12 | |
| # Patch following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval). | |
| sed -E -i~ s/"#undef HAVE_SCM_T_BITS"/"#define HAVE_SCM_T_BITS 1"/ config.h.in | |
| sed -E -i~ s/"-lguile"/"-lguile18"/ configure | |
| sed -E -i~ s/"libguile.h"/"libguile18.h"/g configure tests/matheval.c | |
| # Set guile paths following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval). | |
| CC=gcc-11 GUILE=/opt/local/bin/guile18 GUILE_CONFIG=/opt/local/bin/guile18-config GUILE_TOOLS=/opt/local/bin/guile18-tools ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf libmatheval-1.1.12.tar.gz libmatheval-1.1.12 | |
| - name: Install qhull | |
| run: | | |
| curl -L http://www.qhull.org/download/qhull-2020-src-8.0.2.tgz --output qhull-2020-src-8.0.2.tgz | |
| tar xvfz qhull-2020-src-8.0.2.tgz | |
| cd qhull-2020.2 | |
| make -j3 CC=gcc-11 CXX=g++-11 | |
| sudo make install | |
| cd .. | |
| rm -rf qhull-2020-src-8.0.2.tgz qhull-2020.2 | |
| - name: Install GSL | |
| run: | | |
| curl -L ftp://ftp.gnu.org/gnu/gsl/gsl-2.6.tar.gz --output gsl-2.6.tar.gz | |
| tar xvfz gsl-2.6.tar.gz | |
| cd gsl-2.6 | |
| CC=gcc-11 ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf gsl-2.6 gsl-2.6.tar.gz | |
| - name: Install HDF5 | |
| run: | | |
| curl -L https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.gz --output hdf5-1.8.20.tar.gz | |
| tar -vxzf hdf5-1.8.20.tar.gz | |
| cd hdf5-1.8.20 | |
| CC=gcc-11 CXX=g++-11 FC=gfortran-11 ./configure --prefix=/usr/local --enable-fortran --enable-production | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf hdf5-1.8.20 hdf5-1.8.20.tar.gz | |
| - name: Install FoX | |
| run: | | |
| curl -L https://github.com/andreww/fox/archive/refs/tags/4.1.0.tar.gz --output FoX-4.1.0.tar.gz | |
| tar xvfz FoX-4.1.0.tar.gz | |
| cd fox-4.1.0 | |
| FC=gfortran-11 ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf fox-4.1.0 FoX-4.1.0.tar.gz | |
| - name: Install FFTW3 | |
| run: | | |
| curl -L ftp://ftp.fftw.org/pub/fftw/fftw-3.3.4.tar.gz --output fftw-3.3.4.tar.gz | |
| tar xvfz fftw-3.3.4.tar.gz | |
| cd fftw-3.3.4 | |
| F77=gfortran-11 CC=gcc-11 ./configure --prefix=/usr/local | |
| make -j4 | |
| sudo make install | |
| cd .. | |
| rm -rf fftw-3.3.4 fftw-3.3.4.tar.gz | |
| - name: Install ANN | |
| run: | | |
| curl -L http://www.cs.umd.edu/~mount/ANN/Files/1.1.2/ann_1.1.2.tar.gz --output ann_1.1.2.tar.gz | |
| tar xvfz ann_1.1.2.tar.gz | |
| cd ann_1.1.2 | |
| sed -E -i~ s/"C\+\+ = g\+\+"/"C\+\+ = g\+\+\-11"/ Make-config | |
| make macosx-g++ | |
| cp bin/* /usr/local/bin/. | |
| cp lib/* /usr/local/lib/. | |
| cp -R include/* /usr/local/include/. | |
| - name: Install IO::Socket::SSL | |
| run: | | |
| curl -L https://cpan.metacpan.org/authors/id/C/CH/CHRISN/Net-SSLeay-1.90.tar.gz --output Net-SSLeay-1.90.tar.gz | |
| tar xvfz Net-SSLeay-1.90.tar.gz | |
| cd Net-SSLeay-1.90 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| curl -L https://cpan.metacpan.org/authors/id/S/SU/SULLR/IO-Socket-SSL-1.966.tar.gz --output IO-Socket-SSL-1.966.tar.gz | |
| tar xvfz IO-Socket-SSL-1.966.tar.gz | |
| cd IO-Socket-SSL-1.966 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| cd .. | |
| curl -L https://cpan.metacpan.org/authors/id/M/MK/MKODERER/Sys-CPU-0.52.tar.gz --output Sys-CPU-0.52.tar.gz | |
| tar xvfz Sys-CPU-0.52.tar.gz | |
| cd Sys-CPU-0.52 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| - name: Install CPAN | |
| run: | | |
| sudo perl -MCPAN -e shell | |
| sudo perl -MCPAN -e 'install Bundle::CPAN' | |
| - name: Install Perl modules | |
| run: | | |
| export CFLAGS=-I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Perl/5.18/darwin-thread-multi-2level/CORE | |
| sudo perl -MCPAN -e 'force("install","NestedMap")' | |
| sudo perl -MCPAN -e 'force("install","Scalar::Util")' | |
| sudo perl -MCPAN -e 'force("install","Term::ANSIColor")' | |
| sudo perl -MCPAN -e 'force("install","Text::Table")' | |
| sudo perl -MCPAN -e 'force("install","ExtUtils::ParseXS")' | |
| sudo perl -MCPAN -e 'install Path::Tiny' | |
| sudo perl -MCPAN -e 'install PkgConfig' | |
| sudo perl -MCPAN -e 'install Alien::Base::Wrapper' | |
| sudo perl -MCPAN -e 'force("install","Alien::Libxml2")' | |
| sudo perl -MCPAN -e 'install XML::LibXML::SAX' | |
| sudo perl -MCPAN -e 'force("install","XML::SAX::ParserFactory")' | |
| sudo perl -MCPAN -e 'force("install","XML::Validator::Schema")' | |
| sudo perl -MCPAN -e 'force("install","Text::Template")' | |
| sudo perl -MCPAN -e 'force("install","List::Uniq")' | |
| sudo perl -MCPAN -e 'force("install","IO::Util")' | |
| sudo perl -MCPAN -e 'force("install","Class::Util")' | |
| sudo perl -MCPAN -e 'force("install","CGI::Builder")' | |
| sudo perl -MCPAN -e 'force("install","Simple")' | |
| sudo perl -MCPAN -e 'force("install","Readonly")' | |
| sudo perl -MCPAN -e 'force("install","File::Slurp")' | |
| sudo perl -MCPAN -e 'force("install","XML::Simple")' | |
| sudo perl -MCPAN -e 'force("install","List::MoreUtils")' | |
| sudo perl -MCPAN -e 'force("install","Clone")' | |
| sudo perl -MCPAN -e 'force("install","IO::Scalar")' | |
| sudo perl -MCPAN -e 'force("install","Regexp::Common")' | |
| sudo perl -MCPAN -e 'install LaTeX::Encode' | |
| sudo perl -MCPAN -e 'install Sub::Identify' | |
| - name: Build Galacticus | |
| run: | | |
| export GALACTICUS_EXEC_PATH=`pwd` | |
| export FCCOMPILER=gfortran-11 | |
| export CCOMPILER=gcc-11 | |
| export CPPCOMPILER=g++-11 | |
| export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib -L/opt/local/lib" | |
| export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include" | |
| export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include -I/usr/local/include/libqhullcpp" | |
| make -j3 GALACTICUS_BUILD_OPTION=lib libgalacticus.so | |
| mkdir galacticus | |
| mkdir galacticus/lib | |
| mkdir galacticus/python | |
| mv galacticus.py galacticus/python/ | |
| mv libgalacticus.so galacticus/lib/ | |
| - name: Test interface | |
| run: | | |
| python2 testSuite/test-Python-interface.py | |
| - run: echo "This job's status is ${{ job.status }}." | |
| # Validate, deploy and update | |
| Validate: | |
| runs-on: ubuntu-latest | |
| needs: [ Benchmark-Dark-Matter-Only-Subhalos, Benchmark-Milky-Way-Model, Validate-Dark-Matter-Only-Subhalos, Validate-Milky-Way-Model ] | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Download artifacts (executable-linux) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: galacticus-exec | |
| - name: Download artifacts (benchmark-darkMatterOnlySubhalos) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: benchmark-darkMatterOnlySubhalos | |
| - name: Download artifacts (benchmark-milkyWay) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: benchmark-milkyWay | |
| - name: Download artifacts (validation-darkMatterOnlySubhalos) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: validation-darkMatterOnlySubhalos | |
| - name: Download artifacts (validation-milkyWay) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: validation-milkyWayModel | |
| - name: Download artifacts (build-profile) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: build-profile | |
| - name: Store benchmark result | |
| uses: benchmark-action/github-action-benchmark@v1 | |
| with: | |
| name: Dark matter-only subhalos benchmarks | |
| tool: 'customSmallerIsBetter' | |
| output-file-path: benchmark_darkMatterOnlySubhalos.json | |
| summary-always: false | |
| comment-on-alert: true | |
| alert-comment-cc-users: '@abensonca' | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| auto-push: false | |
| benchmark-data-dir-path: dev/bench/darkMatterOnlySubhalos | |
| gh-pages-branch: gh-pages | |
| alert-threshold: 150% | |
| max-items-in-chart: 256 | |
| - name: Push benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git push --set-upstream origin gh-pages | |
| git checkout - | |
| if: github.event_name != 'pull_request' | |
| - name: Revert benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git reset --hard HEAD~1 | |
| git checkout - | |
| if: github.event_name == 'pull_request' | |
| - name: Store benchmark result | |
| uses: benchmark-action/github-action-benchmark@v1 | |
| with: | |
| name: Milky Way model benchmarks | |
| tool: 'customSmallerIsBetter' | |
| output-file-path: benchmark_milkyWay.json | |
| summary-always: false | |
| comment-on-alert: true | |
| alert-comment-cc-users: '@abensonca' | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| auto-push: false | |
| benchmark-data-dir-path: dev/bench/milkyWayModel | |
| gh-pages-branch: gh-pages | |
| alert-threshold: 150% | |
| max-items-in-chart: 256 | |
| - name: Push benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git push --set-upstream origin gh-pages | |
| git checkout - | |
| if: github.event_name != 'pull_request' | |
| - name: Revert benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git reset --hard HEAD~1 | |
| git checkout - | |
| if: github.event_name == 'pull_request' | |
| - name: Store validation result | |
| uses: benchmark-action/github-action-benchmark@v1 | |
| with: | |
| name: Dark matter-only subhalos benchmarks | |
| tool: 'customSmallerIsBetter' | |
| output-file-path: validate_darkMatterOnlySubhalos.json | |
| summary-always: false | |
| comment-on-alert: true | |
| alert-comment-cc-users: '@abensonca' | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| auto-push: false | |
| benchmark-data-dir-path: dev/bench/darkMatterOnlySubhalos | |
| gh-pages-branch: gh-pages | |
| alert-threshold: 110% | |
| max-items-in-chart: 256 | |
| - name: Push benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git push --set-upstream origin gh-pages | |
| git checkout - | |
| if: github.event_name != 'pull_request' | |
| - name: Revert benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git reset --hard HEAD~1 | |
| git checkout - | |
| if: github.event_name == 'pull_request' | |
| - name: Store validation result | |
| uses: benchmark-action/github-action-benchmark@v1 | |
| with: | |
| name: Milky Way model benchmarks | |
| tool: 'customSmallerIsBetter' | |
| output-file-path: validate_milkyWayModel.json | |
| summary-always: false | |
| comment-on-alert: true | |
| alert-comment-cc-users: '@abensonca' | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| auto-push: false | |
| benchmark-data-dir-path: dev/bench/milkyWayModel | |
| gh-pages-branch: gh-pages | |
| alert-threshold: 110% | |
| max-items-in-chart: 256 | |
| - name: Push benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git push --set-upstream origin gh-pages | |
| git checkout - | |
| if: github.event_name != 'pull_request' | |
| - name: Revert benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git reset --hard HEAD~1 | |
| git checkout - | |
| if: github.event_name == 'pull_request' | |
| - name: Push validation result | |
| run: | | |
| git checkout gh-pages | |
| mv results_darkMatterOnlySubhalos.json dev/valid/darkMatterOnlySubhalos/results.json | |
| mv results_milkyWayModel.json dev/valid/milkyWayModel/results.json | |
| git config --local user.email "github@users.noreply.github.com" | |
| git config --local user.name "github-action-validate" | |
| git add dev/valid/darkMatterOnlySubhalos/results.json dev/valid/milkyWayModel/results.json | |
| git commit -m "Update validation results" | |
| git push --set-upstream origin gh-pages | |
| git checkout - | |
| if: github.event_name != 'pull_request' | |
| - name: Push build profile | |
| run: | | |
| git checkout gh-pages | |
| mkdir -p dev/bench/meta | |
| mv buildProfile.html dev/bench/meta/buildProfile.html | |
| git config --local user.email "github@users.noreply.github.com" | |
| git config --local user.name "github-action-validate" | |
| git add dev/bench/meta/buildProfile.html | |
| git commit -m "Update build profile" | |
| git push --set-upstream origin gh-pages | |
| git checkout - | |
| if: github.event_name != 'pull_request' | |
| Deploy: | |
| runs-on: ubuntu-latest | |
| if: github.ref == 'refs/heads/master' | |
| needs: [ Build-Executable-Linux, | |
| Build-Executables-Instrumented-Linux, | |
| Build-Executables-MPI-Linux, | |
| Build-Library-Linux, | |
| Build-Docker-Linux, | |
| Build-Documentation-Linux, | |
| Build-Tools, | |
| Build-Executable-MacOS, | |
| Build-Library-MacOS, | |
| Build-Tools-MacOS, | |
| Profile-Dark-Matter-Only-Subhalos, | |
| Profile-Milky-Way-Model, | |
| Profile-Milky-Way-SIDM-Model, | |
| Profile-Dark-Matter-Only-Subhalos-GProf, | |
| Profile-Milky-Way-GProf, | |
| Profile-Milky-Way-SIDM-GProf, | |
| Codes, | |
| Crash, | |
| Fail, | |
| Codes-MPI, | |
| Codes-Debugging, | |
| Memory-Leaks, | |
| Memory-Leaks-MPI, | |
| Cosmology, | |
| Mass-Conservation, | |
| Merger-Tree-Builder, | |
| Merger-Tree-Write, | |
| Model-Integration, | |
| Miscellaneous, | |
| Miscellaneous-Cached, | |
| Miscellaneous-Deep, | |
| Miscellaneous-Models, | |
| Outputs, | |
| Regressions, | |
| Regressions-Cached, | |
| Methods, | |
| Methods-MPI, | |
| MPI-State-Restore, | |
| MPI-Radiative-Transfer-Stromgren-Sphere, | |
| MPI-MCMC, | |
| Python-Interface, | |
| Codes-MacOS, | |
| Python-Interface-MacOS, | |
| Validate ] | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Download artifacts (executable-linux) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: galacticus-exec | |
| - name: Download artifacts (library-linux) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: galacticus-library | |
| - name: Download artifacts (docs) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: galacticus-docs | |
| - name: Download artifacts (tools-linux) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: galacticus-tools | |
| - name: Upload assets to release | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| gh release upload bleeding-edge ./Galacticus.exe ./libgalacticus.tar.bz2 ./Galacticus_Usage.pdf ./Galacticus_Physics.pdf ./Galacticus_Development.pdf ./Galacticus_Source.pdf ./tools.tar.bz2 --clobber | |
| rm ./Galacticus.exe ./libgalacticus.tar.bz2 ./Galacticus_Usage.pdf ./Galacticus_Physics.pdf ./Galacticus_Development.pdf ./Galacticus_Source.pdf ./tools.tar.bz2 | |
| - name: Download artifacts (executable-macos) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: galacticus-exec-MacOS | |
| - name: Download artifacts (debug-macos) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: galacticus-debug-MacOS | |
| - name: Download artifacts (library-macos) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: galacticus-library-MacOS | |
| - name: Download artifacts (tools-macos) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: galacticus-tools-MacOS | |
| - name: Upload assets to release | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| gh release upload bleeding-edge ./Galacticus_MacOS.exe ./libgalacticusMacOS.zip ./toolsMacOS.zip ./debugSymbolsMacOS.zip --clobber | |
| rm ./Galacticus_MacOS.exe ./libgalacticusMacOS.zip ./toolsMacOS.zip ./debugSymbolsMacOS.zip | |
| - name: Download artifacts (perf-darkMatterOnlySubHalos) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: perf-darkMatterOnlySubHalos | |
| - name: Download artifacts (perf-milkyWay) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: perf-milkyWay | |
| - name: Download artifacts (perf-milkyWay_SIDM) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: perf-milkyWay_SIDM | |
| - name: Download artifacts (perf-darkMatterOnlySubHalos-gprof) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: perf-darkMatterOnlySubHalos-gprof | |
| - name: Download artifacts (perf-milkyWay-gprof) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: perf-milkyWay-gprof | |
| - name: Download artifacts (perf-milkyWay_SIDM-gprof) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: perf-milkyWay_SIDM-gprof | |
| - name: Upload assets to release | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| gh release upload bleeding-edge ./darkMatterOnlySubHalos.perf.bz2 ./milkyWay.perf.bz2 ./milkyWay_SIDM.perf.bz2 ./darkMatterOnlySubHalos.gprof.bz2 ./milkyWay.gprof.bz2 ./milkyWay_SIDM.gprof.bz2 --clobber | |
| rm ./darkMatterOnlySubHalos.perf.bz2 ./milkyWay.perf.bz2 ./milkyWay_SIDM.perf.bz2 ./darkMatterOnlySubHalos.gprof.bz2 ./milkyWay.gprof.bz2 ./milkyWay_SIDM.gprof.bz2 | |
| Update-Release-Tag: | |
| runs-on: ubuntu-latest | |
| if: github.ref == 'refs/heads/master' | |
| needs: Deploy | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Update tag | |
| run: | | |
| git tag -f bleeding-edge | |
| git push origin -f bleeding-edge | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - run: echo "This job's status is ${{ job.status }}." |