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Added quality and filter fields to GAVariant. #220

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Added quality and filter fields to GAVariant. #220

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bf774d0
Added quality and filter fields to GAVariant.
johntbates Jan 12, 2015
035b03d
Update variants.avdl
johntbates Jan 12, 2015
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13 changes: 13 additions & 0 deletions src/main/resources/avro/variants.avdl
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Expand Up @@ -204,6 +204,19 @@ record Variant {
/** The bases that appear instead of the reference bases. */
array<string> alternateBases = [];

/**
Phred-scaled quality score for the assertion made in ALT.
If ALT is ‘.’ (no variant) then this is −10log10 prob(variant), and if ALT is
not ‘.’ this is −10log10 prob(no variant).
*/
union { null, double } quality = null;

/**
A list of filters (normally quality filters) this variant has failed.
PASS indicates this variant has passed all filters.
*/
array<string> filter = [];

/**
A map of additional variant information.
*/
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