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Look up CallSets by sample ID #208

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adamnovak
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Allowing search by sample ID, and reworking some comments.

@adamnovak adamnovak mentioned this pull request Dec 5, 2014
@benedictpaten
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+1 though perhaps we can keep the minor formatting changes of comments to cleanup commits.

@adamnovak
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OK, I have brought this up to speed with master and pared it down to just the CallSet change: you can now look up CallSets by sample ID.

@adamnovak adamnovak changed the title Refining CallSets Look up CallSets by sample ID Feb 24, 2015
@pgrosu
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pgrosu commented Feb 24, 2015

Nice! Thank you for this @adamnovak :)

@jeromekelleher
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Can you give a quick example of the use case please @adamnovak ? How does this interact semantically with the other fields in the request? Should this be unioned with null so it can be omitted?

@adamnovak
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The use case is to look up CallSets by sample ID; if you went over to the metadata API and found a sample you care about, you will need to be able to get genotype information for it.

I meant to have semantics where an empty array doesn't apply the filter; I forgot to specify that in the comment and will fix that momentarily.

@adamnovak
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OK, it now describes the proper syntax for not using this field.

@adamnovak adamnovak force-pushed the callsetRefinements branch from c92533c to 98792cf Compare March 2, 2015 18:49
If you don't want to specify a sample ID, you can leave the array empty.
@adamnovak
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Sorry, now it actually actually describes the proper syntax for not using the field; I had amended my commit without adding the file.

@jeromekelleher
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Thanks @adamnovak, +1.

@david4096
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david4096 commented Jul 8, 2016

@adamnovak can we close given #636?

Callsets can be filitered by biosampleId.

@david4096 david4096 closed this Jan 12, 2017
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5 participants