Skip to content
View franciscozorrilla's full-sized avatar
💎
💎
90 followers · 42 following

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2Achievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2Achievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Block or report franciscozorrilla

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
franciscozorrilla/README.md

👋 Hi there

Twitter email LinkedIn

Biological engineer-turned computational biologist researching microbial community metabolism in the Sunagawa Lab.

  • ☄️ Developing metagenomics + genome-scale metabolic modeling approaches for microbiome research
  • ⚙️ In descending order of preference, I enjoy coding in bash, R, python, and MATLAB
  • 📦 Writing workflows in Snakemake and deploying them on high performance computing clusters
  • 👽 PhD from Kiran Patil's group @ the MRC Toxicology Unit, University of Cambridge

Francisco's GitHub stats

Pinned Loading

  1. metaGEM metaGEM Public

    💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

    Python 216 43

  2. SymbNET SymbNET Public

    Teaching materials for SymbNET course: from MAGs to GEMs

    Jupyter Notebook 13 3

  3. EMBOMicroCom EMBOMicroCom Public

    Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022

    R 11 2

  4. SysBioChalmers/hanpo-GEM SysBioChalmers/hanpo-GEM Public

    Draft genome-scale model of Hansenula polymorpha (Ogataea polymorpha; Pichia angusta)

    MATLAB 5 1

  5. Chrats-Melkonian/mi_cheese Chrats-Melkonian/mi_cheese Public

    Repository with code & data for the publication Microbial interactions shape cheese flavour formation

    R 2

  6. systems-biology-fba-practical systems-biology-fba-practical Public

    Forked from arianccbasile/Systems-Biology-practical2022

    University of Cambridge Part III Systems Biology course, practical exercises for learning flux balance analysis

    HTML 4 2