This repository hosts my Python solutions for rosalind.info problems!
Rosalind profile: http://rosalind.info/users/felipe.vzps/
E-mail: felipe.vzps@gmail.com
Python Village: Stores codes with initial troubleshooting to learn some Python basics.
- #1 Installing Python.py
- #2 Variables and Some Arithmetic.py
- #3 Strings and Lists.py
- #4 Conditions and Loops.py
- #5 Working with Files.py
- #6 Dictionaries.py
Bioinformatics Stronghold: Contains intermediate algorithms used to solve problems underlying various topics in bioinformatics (computational mass spectrometry, alignment, dynamic programming, genome assembly, genome rearrangements, phylogeny, probability, string algorithms and others).
- #1 Counting DNA Nucleotides.py
- #2 Transcribing DNA into RNA.py
- #3 Complementing a Strand of DNA.py
- #4 Rabbits and Recurrence Relations.py
- #5 Computing GC Content.py
- #6 Counting Point Mutations.py
- #7 Mendel's First Law
- #8 Translating RNA into Protein.py
- #9 Finding a Motif in DNA.py
- #10 Consensus and Profile
- #11 Mortal Fibonacci Rabbits
- #12 Overlap Graphs
- #13 Calculating Expected Offspring
- #14 Finding a Shared Motif
- #15 Independent Alleles
- #16 Finding a Protein Motif
- #17 Inferring mRNA from Protein
- #18 Open Reading Frames
- #19 Enumerating Gene Orders.py
- #20 Calculating Protein Mass.py
- #21 RNA Splicing.py
- More solutions coming soon!
Bioinformatics Armory: Hosts algorithms which I will use bioinformatics tools to solve the exercises available on the platform (exercises similar to those found in Bioinformatics Stronghold).
- #1 Introduction to the Bioinformatics Armory.py
- #2 Introduction to Protein Databases.py
- #3 GenBank Introduction.py
- #4 Data Formats.py
- #5 New Motif Discovery.py
- #6 Pairwise Global Alignment.py
- #7 FASTQ format introduction.py
- #8 Read Quality Distribution.py
- #9 Protein Translation.py
- #10 Read Filtration by Quality.py
- #11 Complementing a Strand of DNA.py
- #12 Suboptimal Local Alignment.py
- #13 Base Quality Distribution.py
- #14 Global Multiple Alignment.py
- #15 Finding Genes with ORFs.py
- #16 Base Filtration by Quality.py