pass filtered jobs to apply via global

src/obr/cli.py

@@ -494,15 +494,15 @@ def apply(ctx: click.Context, **kwargs):
         logger.error(f"Could not find {kwargs['file']}")
         sys.exit(1)
 
-    project, jobs = cli_cmd_setup(kwargs)
+    global filtered_jobs
+    project, filtered_jobs = cli_cmd_setup(kwargs)
 
     os.environ["OBR_APPLY_FILE"] = str(apply_file_path)
     os.environ["OBR_APPLY_CAMPAIGN"] = kwargs.get("campaign", "")
     sys.argv.append("--aggregate")
     sys.argv.append("-t")
     sys.argv.append("1")
     project.run(
-        jobs=jobs,
         names=["apply"],
         progress=True,
         np=1,

src/obr/signac_wrapper/operations.py

@@ -781,6 +781,11 @@ def archive(job: Job, args={}) -> Literal[True]:
 @OpenFOAMProject.operation(aggregator=flow.aggregator())
 def apply(*jobs, args={}):
     import importlib.util
+    import obr.cli
+    # NOTE in order to allow job filtering for apply
+    # we need to bypass the whatever project.run provides
+    jobs = obr.cli.filtered_jobs
+    print(len(jobs))
 
     fp = Path(os.environ.get("OBR_APPLY_FILE"))
     spec = importlib.util.spec_from_file_location("apply_func", fp)