Include population-level and individual-level controls in joint framework #70
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This PR addresses #13 by implementing a joint framework to infer the effect of individual-level and population-level control measures on the probability that an outbreak will become an epidemic or go extinct. This changes the function signatures of
probability_epidemic(),probability_extinct()andprobability_contain(), to include thepop_controlandind_controlarguments.probability_contain()can now compute the probability of containment for multiple initial infections for both population-level control and individual-level control with the analytical calculation, and for population-level control only for the stochastic calculation. (The function argument default value fornum_init_infectis now removed as a result).Function documentation and tests for each of these functions is updated.