Update README_template.md

README_template.md

@@ -1,30 +1,23 @@
+[![DOI](https://zenodo.org/badge/XXXXXX.svg)](https://zenodo.org/badge/latestdoi/XXXXXX)
+
 # Analysis & Visualization Snakemake Workflow Using/Powered by PACKAGE for DATA/MODALITY
 A [Snakemake](https://snakemake.readthedocs.io/en/stable/) workflow for performing and visualizing analyses of data (e.g., ...) powered by the package [package](https://www.packageURL.org).
 
-This workflow adheres to the module specifications of [MR.PARETO](https://github.com/epigen/mr.pareto), an effort to augment research by modularizing (biomedical) data science. For more details, instructions, and modules check out the project's repository. Please consider **starring** and sharing modules that are interesting or useful to you, this helps others find and benefit from my work and me to prioritize my efforts!
+> [!NOTE]  
+> This workflow adheres to the module specifications of [MR.PARETO](https://github.com/epigen/mr.pareto), an effort to augment research by modularizing (biomedical) data science. For more details, instructions, and modules check out the project's repository.
+>
+> ⭐️ Star and 📤 share modules you find valuable — help others discover them, and guide our focus for future work!
 
-**If you use this workflow in a publication, don't forget to give credits to the authors by citing the URL of this (original) repository (and its DOI, see Zenodo badge above -> coming soon).**
+> [!IMPORTANT]  
+> **If you use this workflow in a publication, please don't forget to give credit to the authors by citing it using this DOI [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX).**
 
 ![Workflow Rulegraph](./workflow/dags/rulegraph.svg)
 
-Table of contents
-----------------
-  * [Authors](#authors)
-  * [Software](#software)
-  * [Methods](#methods)
-  * [Features](#features)
-  * [Usage](#usage)
-  * [Configuration](#configuration)
-  * [Examples](#examples)
-  * [Links](#links)
-  * [Resources](#resources)
-  * [Publications](#publications)
-
-# Authors
+# 🖋️ Authors
 - [MR.PARETO](https://github.com/epigen/mr.pareto)
 
 
-# Software
+# 💿 Software
 This project is designed to run on top of the [Snakemake workflow management system](https://snakemake.readthedocs.io/en/stable/) and has been tested against the Snakemake version listed in the table below. In addition this project depends on, and is made possible by, the following Software:
 
 | Software | Reference (DOI) |
@@ -34,7 +27,7 @@ This project is designed to run on top of the [Snakemake workflow management sys
 | packageB | https://doi.org/10.BBBB/ |
 
 
-# Methods
+# 🔬 Methods
 This is a template for the Methods section of a scientific publication and is intended to serve as a starting point. Only retain paragraphs relevant to your analysis. References [ref] to the respective publications are curated in the software table above. Versions (ver) have to be read out from the respective conda environment specifications (workflow/envs/\*.yaml file) or post execution in the result directory (/envs/{module}/\*.yaml). Parameters that have to be adapted depending on the data or workflow configurations are denoted in squared brackets e.g., [X].
 
 __Analysis.__ Analysis was performed...
@@ -44,7 +37,7 @@ __Visualization.__ The results were visualized...
 
 **The analysis and visualizations described here were performed using a publicly available Snakemake [ver] (ref) workflow [ref - cite this workflow here].**
 
-# Features
+# 🚀 Features
 The workflow performs the following steps that produce the outlined results:
 
 - Analysis
@@ -56,27 +49,31 @@ The workflow performs the following steps that produce the outlined results:
   - ...
 
 
-# Usage
+# 🛠️ Usage
 Here are some tips for the usage of this workflow:
 - ...
 
-# Configuration
+# ⚙️ Configuration
 Detailed specifications can be found here [./config/README.md](./config/README.md)
 
-# Examples
+# 📖 Examples
 --- COMING SOON ---
 
-# Links
+# 🔗 Links
 - [GitHub Repository](https://github.com/user/module/)
 - [GitHub Page](https://user.github.io/module/)
 - [Zenodo Repository (coming soon)]()
 - [Snakemake Workflow Catalog Entry](https://snakemake.github.io/snakemake-workflow-catalog?usage=user/module)
 
-# Resources
+# 📚 Resources
 - Recommended [MR.PARETO](https://github.com/epigen/mr.pareto) modules for up-/downstream analyses:
     - ...
 - ...
 
-# Publications
+# 📑 Publications
 The following publications successfully used this module for their analyses.
 - ...
+
+# ⭐ Star History
+
+[![Star History Chart](https://api.star-history.com/svg?repos=epigen/atacseq_pipeline&Date)