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ekorpela authored Jul 3, 2024
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Expand Up @@ -95,10 +95,10 @@ This scRNA-seq experiment embedding "controlled" cancer heterogeneity includes t
The experiment was done using CellPlex technology from 10XGenomics allowing multiplexing samples into a single channel and therefore removing unwanted batch effects.

The full experiment description is available in the paper by [*Arigoni et al 2024*](https://www.nature.com/articles/s41597-024-03002-y).
The raw data was deposited to GEO: [*GSE243665*](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE243665)
The count tables from the entire BE1 experiment are available through an [*R Shiny app*](http://130.192.212.153:3838/), allowing users to construct datasets encompassing different cell lines at varying ratios. An R package providing the same functionalites of the R Shiny app is available at [*github.com/kendomaniac/BE1*](https://github.com/kendomaniac/BE1).
Processed data are available at [*10.6084/m9.figshare.23939481*](https://doi.org/10.6084/m9.figshare.23939481.v1)
For further information please contact raffaele dot calogero at unito dot it
- The raw data was deposited to GEO: [*GSE243665*](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE243665)
- The count tables from the entire BE1 experiment are available through an [*R Shiny app*](http://130.192.212.153:3838/), allowing users to construct datasets encompassing different cell lines at varying ratios. An R package providing the same functionalites of the R Shiny app is available at [*github.com/kendomaniac/BE1*](https://github.com/kendomaniac/BE1).
- Processed data are available at [*10.6084/m9.figshare.23939481*](https://doi.org/10.6084/m9.figshare.23939481.v1)
- For further information please contact raffaele dot calogero at unito dot it

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