[Code] adjust the orders of delete steps to avoid long lang server initialization stage

[mw-ding]

Summary

This change could eventually delete the repo which is hanging in indexing stage because of long LSP initialization.

Checklist

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• This was checked for cross-browser compatibility, including a check against IE11
• Any text added follows EUI's writing guidelines, uses sentence case text and includes i18n support
• Documentation was added for features that require explanation or tutorials
• Unit or functional tests were updated or added to match the most common scenarios
• This was checked for keyboard-only and screenreader accessibility

For maintainers

• This was checked for breaking API changes and was labeled appropriately
• This includes a feature addition or change that requires a release note and was labeled appropriately

[elasticmachine]

Pinging @elastic/code

[elasticmachine]

💚 Build Succeeded

• continuous-integration/kibana-ci/pull-request