Computational tools for the Human Cell Atlas

a list of collaborative computational projects supported by CZI

Projects

Here is a sample template you can copy and paste to add your project:

TITLE	DESCRIPTION	PEOPLE & AFFILIATIONS
[name](link to repo)	description of the project	Jeremy Freeman, PhD @ CZI Science
[another project name](link to repo)	description of the project	Joe Hand and Danielle Robinson, PhD @ CS&S

Bioconductor

TITLE	DESCRIPTION	PEOPLE & AFFILIATIONS

Cell Type

TITLE	DESCRIPTION	PEOPLE & AFFILIATIONS

Cell State

TITLE	DESCRIPTION	PEOPLE & AFFILIATIONS

Compression

TITLE	DESCRIPTION	PEOPLE & AFFILIATIONS

Imaging

TITLE	DESCRIPTION	PEOPLE & AFFILIATIONS

Latent Spaces

TITLE	DESCRIPTION	PEOPLE & AFFILIATIONS
Tybalt	Variational Autoencoder for Gene Expression (Paper)	Greg Way, Qiwen Hu, and Casey Greene @Greenelab @Penn

Manifold Alignment

TITLE	DESCRIPTION	PEOPLE & AFFILIATIONS

Multiomics

TITLE	DESCRIPTION	PEOPLE & AFFILIATIONS

Population Variation

TITLE	DESCRIPTION	PEOPLE & AFFILIATIONS

Portals

TITLE	DESCRIPTION	PEOPLE & AFFILIATIONS

Scale

TITLE	DESCRIPTION	PEOPLE & AFFILIATIONS

Trajectories

TITLE	DESCRIPTION	PEOPLE & AFFILIATIONS