Ensure that gaussdca use the active project environment

diegozea · May 27, 2021 · 2146ae3 · 2146ae3 · diegozea · May 27, 2021
1 parent 18e5777
commit 2146ae3
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Showing 2 changed files with 7 additions and 3 deletions.
diff --git a/Project.toml b/Project.toml
@@ -1,6 +1,6 @@
 name = "MIToS"
 uuid = "51bafb47-8a16-5ded-8b04-24ef4eede0b5"
-version = "2.8.3"
+version = "2.8.4"
 
 [deps]
 ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"

diff --git a/src/Information/Externals.jl b/src/Information/Externals.jl
@@ -21,7 +21,11 @@ Baldassi, Carlo, Marco Zamparo, Christoph Feinauer, Andrea Procaccini, Riccardo
 "Fast and accurate multivariate Gaussian modeling of protein families: predicting residue contacts and protein-interaction partners."
 PloS one 9, no. 3 (2014): e92721.
 """
-function gaussdca(msa; juliapath::String=joinpath(Sys.BINDIR,Base.julia_exename()), kargs...)
+function gaussdca(
+		  msa; 
+		  juliapath::String=joinpath(Sys.BINDIR,Base.julia_exename()), 
+		  project::String=Base.active_project(),
+		  kargs...)
     base_name = tempname()
     if Sys.iswindows()
         base_name = escape_string(base_name)
@@ -37,7 +41,7 @@ function gaussdca(msa; juliapath::String=joinpath(Sys.BINDIR,Base.julia_exename(
     write(msa_file, msa, FASTA)
     try
         _create_script(script_file, msa_file, jdl_file; kargs...)
-        run(`$juliapath $script_file`)
+        run(`$juliapath --project=$project $script_file`)
         pairedvalues = open(deserialize, jdl_file, "r")
         for (i,j,value) in pairedvalues
            plm[i,j] = value