Code

ini format#132

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LeilyR merged 31 commits intodevelopdeeptools/pyGenomeTracks:developfrom ini_formatdeeptools/pyGenomeTracks:ini_formatCopy head branch name to clipboardNov 26, 2019

+556-510

Commits

Commits on Oct 29, 2019

• generating empty regions when the regions are not available on the given files

  

  Leily Rabbani

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  c9b3a84

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Commits on Oct 31, 2019

• Merge branch 'develop' of https://github.com/deeptools/pyGenomeTracks into develop

  

  Leily Rabbani

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  2c28261

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• removed a print from bedTrack.py

  

  Leily Rabbani

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  ea0f227

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• Narrow peak (#123)

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  lldelisle

  authored and

  LeilyR

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  feafb35

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• solved issue with log (#125)

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  lldelisle

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  LeilyR

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  4048bd6

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• fixed the issue with data type in narrowPeaks

  

  Leily Rabbani

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  7d24a1b

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Commits on Nov 1, 2019

• put the warning for tbx

  lldelisle

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  0fdbf55

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• changed the default of get_scores

  lldelisle

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  5869983

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• deal with vlines not in the good chr

  lldelisle

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  69bcdf9

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• check the output of get_score is not empty before plotting

  lldelisle

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  2e72c2b

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• added tests

  lldelisle

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  40de299

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• linting

  lldelisle

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  64a665a

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• Merge pull request #128 from lldelisle/narrowPeak_debug_LD

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  bgruening

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  b69df43

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Commits on Nov 4, 2019

• merged origin/narrowPeak_debug

  

  Leily Rabbani

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  9e74c5d

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Commits on Nov 5, 2019

• replaced spaces by _

  

  Leily Rabbani

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  713700d

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Commits on Nov 7, 2019

• many more changes from space to _

  

  Leily Rabbani

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  86c2c4d

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• fix tests for the current changes

  

  Leily Rabbani

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  ebd5c3a

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• changed more tests to match the new new nameing format

  

  Leily Rabbani

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Commits on Nov 8, 2019

• more changes in tests

  

  Leily Rabbani

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  df66a51

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• fixed hic tests

  

  Leily Rabbani

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  4030f96

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• more fix on hic test

  

  Leily Rabbani

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  866794c

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Commits on Nov 15, 2019

• fixed master_tracks.ini

  

  Leily Rabbani

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  3659e66

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• changed master_plot.png

  

  Leily Rabbani

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Commits on Nov 18, 2019

• fixed the changes in test_plot_tracks.py

  

  Leily Rabbani

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• ran generateAllOutput for global changes

  

  Leily Rabbani

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  30ad933

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• updated narrow peak tests

  

  Leily Rabbani

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Commits on Nov 25, 2019

• fixed the matplotlin version

  

  Leily Rabbani

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  def24a8

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• test-hic-img

  

  Leily Rabbani

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  39a47ce

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• hopefully solved all travis incompatibilities between images

  

  Leily Rabbani

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  b123037

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• Merge branch 'develop' of https://github.com/deeptools/pyGenomeTracks into ini_format

  

  Leily Rabbani

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  8e152b3

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• fixed redefinition of functions caused by merging develop

  

  Leily Rabbani

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