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2024-11-12 Custom DC stable release #4733

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TODO: Summarize changes since last stable release.

chejennifer and others added 16 commits November 5, 2024 21:18
- Add multi-hop properties needed for the hero queries
- Update multi-hop properties where naming has changed from data cleanup
- Update entity overview tile to link to the browser page for ease of
testing
…onsorg#4714)

Hopefully this will resolve custom DC autopush test failures.
- Remove some landing page example links that don't work anymore
- Add parallelization for Custom DC autopush tests
- Add some waiting for elements to be ready in tests that were failing
on Cloud Build
- when multiple entities are recognized but only some entities have data
for the property, should only show the entities with data (e.g.,
[autopush](https://screenshot.googleplex.com/48VaUAxjZtXYMgC) vs
[local](https://screenshot.googleplex.com/Brsnuj4DSNmpJSN))
- fix bug in deciding when to show low confidence message. Previously
did not consider property score
…hm. (datacommonsorg#4716)

Places like Curaçao, España, or Algérie were being unfairly demoted in
scoring due to the non-ascii character. This PR replaces all special
characters before determine the match score.

Screencast with the fix:
https://screencast.googleplex.com/cast/NDkzOTc5NTE5MjA4NjUyOHw1N2FlYTVmMC00Zg
…tacommonsorg#4718)

Reduces CosineScores to 6 decimals to reduce the diffs that are
generated when updating the integration_test goldens.

This is to reduce noise in reviews and should not fundamentally affect
the actual tests.
)

Disabling the LLM fallback for entity based queries for now since the
prompt is tailored to place+statvar queries.
Adds:
- mechanismOfAction
- hgncID
- inChIKey

Updates:
- unifiedMedicalLanguageSystemConceptUniqueIdentifier ->
umlsConceptUniqueID
- ncbiTaxonID->ncbiTaxId
- referenceAlleleNCBI -> referenceAllele
- genomicCoordinates -> hasGenomicCoordinates

Deletes:
- diseaseName
- observedAllele
- hg19GenomicPosition
- hg19GenomicLocation
- hg38GenomicPosition
- hg38GenomicLocation
- hasRNATranscript
- ncbiDNASequenceName
- imageUrl
- availableStrength

Example Screenshots

![image](https://github.com/user-attachments/assets/6783a776-48e0-4ceb-aa57-b0276a67d2db)

![image](https://github.com/user-attachments/assets/568b48e8-c6b6-4dce-9e99-af9bf7f0f912)

![image](https://github.com/user-attachments/assets/8f31b18b-3169-4ef0-a67d-a0b6cea3bf71)
## Description

This PR implements the redesign of the explorer landing page page.

The first part of the PR converts the page to a React app with
components followed by a reworking of the page into the new layout.

The link content for the stat var chips have been added to the same
`TopicConfig` as the general and comparison query links.

The link chip component has been generalized to contain a variant for
the stat var chips.

---------

Co-authored-by: Pablo Noel <pablo@next-solutions.ca>
# Summary

- Include remediation instructions in error message.
- Rename check file to "Release branch checks"
(release-branch-checks.yml)
- This makes the prefix of the check where it's listed on a PR
non-redundant, and also sets us up to potentially have more checks in
there in the future.
- I've called it "Release branch checks" instead of "Custom DC stable
branch checks" because technically the same checks would apply if we
ever wanted to use release branches for website prod and staging.
- Rename job to "verify_all_commits_are_already_in_master" so the name
makes sense on its own.

Also, update version of checkout action to one that isn't about to be
deprecated.

# Screenshots
## On PR
![on
PR](https://github.com/user-attachments/assets/af0e842c-19ae-485f-8d76-4e43f6e1db83)

## After clicking through from PR
![after clicking through from
PR](https://github.com/user-attachments/assets/4d68bf54-f8b5-4146-8a55-bc2183cfab31)

## In Actions tab
![in actions
tab](https://github.com/user-attachments/assets/f44d3bc4-a0a8-4350-bd80-236d9c0928a7)

## After clicking through from Actions tab
![after clicking through from actions
tab](https://github.com/user-attachments/assets/113e4093-0f6d-4005-a64f-7f6eaa0663c3)
…rg#4730)

Autocomplete queries only trigger on 3+ letter words. With this change,
we add one exception, to trigger on a two letter word if that is "US"

US Triggers:  https://screenshot.googleplex.com/AzqxmiqBBr2ocVn
Other 2 letter words do not:
https://screenshot.googleplex.com/7tXxN8p34MT4SUU
Life expectancy in us: https://screenshot.googleplex.com/6k7WK2oiJqWedxK
@n-h-diaz n-h-diaz closed this Nov 13, 2024
@n-h-diaz n-h-diaz deleted the cdcStableUpdate branch November 13, 2024 17:21
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7 participants