updated version of bedboss

databio · Jan 17, 2025 · f687af1 · f687af1
1 parent 8980a01
commit f687af1
Show file tree

Hide file tree

Showing 3 changed files with 7 additions and 3 deletions.
diff --git a/.github/workflows/cron_upload.yml b/.github/workflows/cron_upload.yml
@@ -27,7 +27,8 @@ jobs:
           python -m pip install --upgrade pip
           pip install uv
           uv pip install torch==2.3.1+cpu -f https://download.pytorch.org/whl/torch_stable.html --system
-          uv pip install git+https://github.com/databio/bedboss.git@dev#egg=bedboss --system
+          uv pip install bedboss --system
+#          uv pip install git+https://github.com/databio/bedboss.git@dev#egg=bedboss --system
 
       - name: Get current date and date 2 days ago
         id: dates

diff --git a/.github/workflows/upload_by_date.yml b/.github/workflows/upload_by_date.yml
@@ -33,7 +33,9 @@ jobs:
           python -m pip install --upgrade pip
           pip install uv
           uv pip install torch==2.3.1+cpu -f https://download.pytorch.org/whl/torch_stable.html --system
-          uv pip install git+https://github.com/databio/bedboss.git@dev#egg=bedboss --system
+          uv pip install bedboss --system
+#          uv pip install git+https://github.com/databio/bedboss.git@dev#egg=bedboss --system
+
 
       - name: Print dates
         run: |

diff --git a/.github/workflows/upload_gse.yml b/.github/workflows/upload_gse.yml
@@ -26,7 +26,8 @@ jobs:
           python -m pip install --upgrade pip
           pip install uv
           uv pip install torch==2.3.1+cpu -f https://download.pytorch.org/whl/torch_stable.html --system
-          uv pip install git+https://github.com/databio/bedboss.git@dev#egg=bedboss --system
+          uv pip install bedboss --system
+#          uv pip install git+https://github.com/databio/bedboss.git@dev#egg=bedboss --system
 
       - name: Do something here
         run: |