monai_uf_tutorials

This repository hosts tutorials for using MONAI on UF HiperGator.

Download this repository on HiperGator

Log in to HiperGator, change hju to your HiperGator username

ssh hju@hpg.rc.ufl.edu

Go to your home directory

cd ~

Download this repository into a local directory. The default name of the directory is monai_uf_tutorials.

git clone https://github.com/hw-ju/monai_uf_tutorials.git

Make all files in the directory executable

chmod -R +x monai_uf_tutorials/

Contents

1. use MONAI Core for single-GPU training
2. use MONAI Core for multi-GPU training
3. use MONAI Core for Swin UNETR training & evaluation for BRATS21
4. use MONAI Core for Swin UNETR self-supervised pretraining for BTCV
5. use MONAI Core for Swin UNETR training & evaluation for BTCV
6. use Datasets accelerated by caching in MONAI Core