Pcdc dev #58
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Pcdc dev #58
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* add cp setting to scripts file * add path for dataservice_setting folder path
…c-cdis#1828) * feat(jobs): add visa update job for fence (cronjob already exists) * Update kube-setup-fence.sh * fix(visa-jobs): fix whitespace for YAML and remove unneeded code * fix(visa-jobs): remove cronjobs fields from job definition * fix(fence): correct visa update job to pass correct params and return real exit code based on the command Co-authored-by: Alexander VT <alexander.m.vantol@gmail.com>
* fix: install kubectl
* Enable squid on fips enabled Amazon Linux 2 ami
* fix: add service linked role for KMS * fix: add service linked role for KMS
* Add ability to enable flow logs to VPC
Enable DataDog network monitoring
uc-cdis#1850) * chore(presigned-url-fence): rm GEN3_UWSGI_TIMEOUT * chore(revproxy): rm fence timeouts for ga4gh
…underscore in the username (uc-cdis#1880) Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
merge from CTDS
The cohort-data endpoints should only be used by internal services, and never be exposed to users/browsers
uc-cdis#1878) * feat(secondary-cidr): Added configuration to setup secondary CIDR for workflow ASG * feat(secondary-cidr): Added configuration to setup secondary CIDR for workflow ASG * feat(secondary-cidr): Added configuration to setup secondary CIDR for workflow ASG * feat(secondary-cidr): Added configuration to setup secondary CIDR for workflow ASG * feat(secondary-cidr): Added configuration to setup secondary CIDR for workflow ASG * feat(secondary-cidr): Added configuration to setup secondary CIDR for workflow ASG * feat(secondary-cidr): Added configuration to setup secondary CIDR for workflow ASG * feat(secondary-cidr): Added configuration to setup secondary CIDR for workflow ASG Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
* fix(workflow-taints): Added taints to workflow nodes * fix(workflow-taints): Added taints to workflow nodes Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
…ones (uc-cdis#1888) Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
…ones (uc-cdis#1889) Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
uc-cdis#1877) * chore(update-argo-script): Updated argo script to include features needed for VHDC * chore(update-argo-script): Updated argo script to include features needed for VHDC * chore(update-argo-script): Updated argo script to include features needed for VHDC * chore(update-argo-script): Updated argo script to include features needed for VHDC * chore(update-argo-script): Updated argo script to include features needed for VHDC * chore(update-argo-script): Updated argo script to include features needed for VHDC * chore(update-argo-script): Updated argo script to include features needed for VHDC Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
* Update web_wildcard_whitelist * Update web_whitelist
…oscaler (uc-cdis#1885) Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
* chore(argo-connectivity): Added rules to allow argo to connect to wts and cohort-middleware * chore(argo-connectivity): Added rules to allow argo to connect to wts and cohort-middleware Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
Co-authored-by: Ramu Nerella <ramunerella@Ramus-MacBook-Pro.local>
* install all tools on jenkins2 * Update Dockerfile * add python install script
…c-cdis#1913) The following vulnerabilities are fixed with an upgrade: - https://snyk.io/vuln/SNYK-DEBIAN10-OPENSSL-1569403 - https://snyk.io/vuln/SNYK-DEBIAN10-PERL-570792 - https://snyk.io/vuln/SNYK-DEBIAN10-PERL-570797 - https://snyk.io/vuln/SNYK-DEBIAN10-PERL-570802 - https://snyk.io/vuln/SNYK-DEBIAN10-SUBVERSION-1071814 Co-authored-by: snyk-bot <snyk-bot@snyk.io>
…dex and type match (uc-cdis#1915) * fix(mutate-guppy-config-for-pfb-export-test): yq * fix(mutate-etl-mapping-config): use yq -yi ... * fix(mutate-guppy-config-for-pfb...): use gitops * fix(mutate-guppy-config...): make from etl-mapping * fix(mutate-etl-mapping): check for prior run * fix(mutate-etl-mapping): invert grep check * docs(gitops): add configmaps-from-json
Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
merge from ctds
create bucket and user for amanuensis data request process
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