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Pcdc dev #45

Merged
merged 26 commits into from
Jan 5, 2022
Merged

Pcdc dev #45

merged 26 commits into from
Jan 5, 2022

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grugna
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@grugna grugna commented Jan 5, 2022

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UchicagoZchen138 and others added 26 commits November 4, 2021 15:20
* feat(aws-gateway): setup mariner persistent volume and persistent volume claim

* feat(indexd): add mariner pod and engine to indexd network policy
…s#1773)

* feat(python): new python 3.10 base image based off 3.6-buster

* feat(tests): add test for 3.10 buster image

* Update README.md

* feat(python): use printf instead of echo -e for debian based python image

Co-authored-by: Alexander VT <alexander.m.vantol@gmail.com>
…c-cdis#1770)

* feat(squid-autohealing): Added healthcheck script/cronjob for squid

* feat(squid-autohealing): Added healthcheck script/cronjob for squid

* feat(squid-autohealing): Added healthcheck script/cronjob for squid

* feat(squid-autohealing): Added healthcheck script/cronjob for squid

Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis>
* Update dockerrun.sh

* Update dockerrun.sh
* added param for validation job, allowing manifest creation despite error

* uppercase
* fix(tf-squid-module): add cross region support (uc-cdis#1507)

* Update TF AWS EKS module (uc-cdis#1573)

Remove dependency on hardcoded default AvailabilityZones. Replace
with dynamic lookup from current aws_availability_zones data source.

* Update cloud.tf

* Update variables.tf

Co-authored-by: reisingerf <31906163+reisingerf@users.noreply.github.com>
…'t fail. (uc-cdis#1786)

Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis>
* feat: atlas deployment

* feat: nginx config for Atlas

* feat: add WebApi secret

* fix: webapi secret file path

* fix: try new path for settings.xml

* fix: try new path (settings.xml in root)

* feat: add OHDSI BroadSea WebTools

* feat: revproxy config for BroadSea

* feat: add config-local to BroadSea

* feat: new configmap

* feat: converge to BroadSea WebTools

* Revert "feat: converge to BroadSea WebTools"

This reverts commit 8ae7c6e.

* feat: update to Atlas/WebAPI

* fix: type

* feat: updates

* feat: update revproxy config

* feat: remove broadsea offering

* feat: remove config-local

* feat: atlas port change

* feat: one more place for port change for Atlas

* feat: get back local config

* Revert "feat: get back local config"

This reverts commit 742534ff33840f5d49dceb79a54667a4621d818b.

* feat: disable WebAPI probes for a while

* feat: config-local as a configMap

* feat: nginx config for WebAPI

* feat: some extra configuration

* feat: extra commands

* fix: proper variable substitution

* feat: netpol annotations for ohdsi-tools

* feat: add cohort-middleware

* fix: templating variable

* feat: add nginx config

* added ingress for ohdsi-atlas (uc-cdis#1743)

* feat: add DataDog env variables

Co-authored-by: Ajo Augustine <ajoaugustine@gmail.com>
* chore: adding cronjob version check to gitops-sync

* adding version replacement code

* fixing the command

* dummy commit for git hash sync issue

* change in bucket name

* fixing the variable

* adding condition for running the job
…d19 cronjob setup logic (uc-cdis#1798)

Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis>
* fix: add timeout

* change timeout

* update
* feat(google): new cronjob for removing cached Google data access

* fix(google): fix fence-create command and  job metadata to correct names

* fix(google): fix cronjob metadata name to match file name as cloud auto expects

* Update kube-setup-google.sh

* Update arborist-rm-expired-access-cronjob.yaml

* Update kube-setup-google.sh

* Update kube-setup-google.sh

Co-authored-by: Alexander VT <alexander.m.vantol@gmail.com>
@grugna grugna merged commit 56332da into master Jan 5, 2022
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