[WIP] Add XLNet support for Reader

[fmikaelian]

• Implement sklearn wrapper on top of new QA script provided by HF
• Train XLNet on SQuAD 2.0 with wrapper
• Add ability to load pre-trained reader with .bin file instead of pickling class object, ensuring compatibility with HF and avoiding confusion
• Report training time and hardware used
• Set verbose parameter
• Report evaluation metrics
• Integrate in QAPipeline()
• Replace log_prob (softmax probs) by the raw logits to select best answer among paragrahs

  cdQA/cdqa/reader/utils_squad.py

  Lines 873 to 876 in 993ac5e

  	final_predictions_sorted = collections.OrderedDict(sorted(final_predictions.items(),
  	key=lambda item: item[1]['start_log_prob'] +
  	item[1]['end_log_prob'],
  	reverse=True))

• Evaluate complete cdQA pipeline
• Update cdQA-annotator and cdQA-ui to support no answer

[codecov]

Codecov Report

Merging #205 (660760c) into master (bda1c32) will decrease coverage by 8.00%.
The diff coverage is 0.00%.

@@            Coverage Diff             @@
##           master     #205      +/-   ##
==========================================
- Coverage   31.23%   23.22%   -8.01%     
==========================================
  Files           7        9       +2     
  Lines        1508     2032     +524     
==========================================
+ Hits          471      472       +1     
- Misses       1037     1560     +523     

Impacted Files	Coverage Δ
cdqa/reader/reader_sklearn.py	0.00% <0.00%> (ø)
cdqa/reader/utils_squad.py	0.00% <0.00%> (ø)
cdqa/reader/utils_squad_evaluate.py	0.00% <0.00%> (ø)
cdqa/reader/bertqa_sklearn.py	58.90% <0.00%> (+0.15%)	⬆️

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[fmikaelian]

ValueError during evaluation after training:

Traceback (most recent call last):
  File "tutorial-train-xlnet-squad.py", line 39, in <module>
    out_eval, final_prediction = reader.evaluate(X='dev-v2.0.json')
ValueError: too many values to unpack (expected 2)

[fmikaelian]

To use the XLNet reader with a pretrained .bin model:

import wget
from cdqa.reader.reader_sklearn import Reader

wget.download(url='https://github.com/cdqa-suite/cdQA/releases/download/XLNet_cased_vCPU/pytorch_model.bin', out='.')

# cast Reader class with train params
reader = Reader(model_type='xlnet',
                model_name_or_path='xlnet-base-cased',
                output_dir='.',
                evaluate_during_training=False,
                no_cuda=False,
                fp16=False,
                pretrained_model_path='.')

# make some predictions
reader.predict(X='dev-v2.0-small.json')

[fmikaelian]

• hardware: GeForce RTX 208
• training time: 9 hours

[andrelmfarias]

Implementation of XLNetForQuestionAnswering is pretty different from BertForQuestionAnswering and the official HF version does not output the logits for now.
XLNetForQuestionAnswering uses Beam Search to find the best (and more probable) span, while BertForQuestionAnswering maximises the start_score and end_score separately.

from #196

[alex-movila]

Any progress with this?
In meantime we have even better models: RoBERTa and ERNIE 2.0

[fmikaelian]

Hi @alex-movila

You can follow our progress on this PR here. We described all the steps to achieve in order to be synced with the latest changes made by @huggingface.

At the moment we depend on the pytorch-transformers repository as a backend for our QA system. The @huggingface community is progressively implementing new models. They are now in the process of adding RoBERTa (see this). They don't have plan to add ERNIE a the moment (see this).

Their new API should allow the user to use any transformer to do QA. We are looking to provide the same thing with cdQA.

[fmikaelian]

I could not replicate results of official SQuAD 2.0 with our trained XLNet model:

from cdqa.reader.reader_sklearn import Reader

reader = Reader(model_type='xlnet',
                model_name_or_path='xlnet-base-cased',
                fp16=False,
                output_dir='.',
                no_cuda=False,
                pretrained_model_path='.')

reader.evaluate(X='dev-v2.0.json')

See my colab notebook for reproducibility: https://colab.research.google.com/github/cdqa-suite/cdQA/blob/sync-huggingface/examples/tutorial-eval-xlnet-squad2.0.ipynb

{
  "exact": 35.643897919649625,
  "f1": 40.81892328134685,
  "total": 11873,
  "HasAns_exact": 67.29082321187585,
  "HasAns_f1": 77.65571459504568,
  "HasAns_total": 5928,
  "NoAns_exact": 4.087468460891506,
  "NoAns_f1": 4.087468460891506,
  "NoAns_total": 5945,
  "best_exact": 50.07159100480081,
  "best_exact_thresh": 0.0,
  "best_f1": 50.07159100480081,
  "best_f1_thresh": 0.0
}

{'HasAns_exact': 67.29082321187585,
 'HasAns_f1': 77.65571459504568,
 'HasAns_total': 5928,
 'NoAns_exact': 4.087468460891506,
 'NoAns_f1': 4.087468460891506,
 'NoAns_total': 5945,
 'best_exact': 50.07159100480081,
 'best_exact_thresh': 0.0,
 'best_f1': 50.07159100480081,
 'best_f1_thresh': 0.0,
 'exact': 35.643897919649625,
 'f1': 40.81892328134685,
 'total': 11873}

It might be an not optimzed hyperparameters issue (see this: huggingface/transformers#822).

@andrelmfarias can you confirm the params you used during training? (https://github.com/cdqa-suite/cdQA/blob/sync-huggingface/examples/tutorial-train-xlnet-squad.py)

[andrelmfarias]

I had to reduce some parameters (max_length, batch_size, etc.). The GPU did not handle the training with default parameters. It might be that.

[fmikaelian]

I could not replicate results of official SQuAD 2.0 with our trained XLNet model:

from cdqa.reader.reader_sklearn import Reader

reader = Reader(model_type='xlnet',
                model_name_or_path='xlnet-base-cased',
                fp16=False,
                output_dir='.',
                no_cuda=False,
                pretrained_model_path='.')

reader.evaluate(X='dev-v2.0.json')

See my colab notebook for reproducibility: https://colab.research.google.com/github/cdqa-suite/cdQA/blob/sync-huggingface/examples/tutorial-eval-xlnet-squad2.0.ipynb

{
  "exact": 35.643897919649625,
  "f1": 40.81892328134685,
  "total": 11873,
  "HasAns_exact": 67.29082321187585,
  "HasAns_f1": 77.65571459504568,
  "HasAns_total": 5928,
  "NoAns_exact": 4.087468460891506,
  "NoAns_f1": 4.087468460891506,
  "NoAns_total": 5945,
  "best_exact": 50.07159100480081,
  "best_exact_thresh": 0.0,
  "best_f1": 50.07159100480081,
  "best_f1_thresh": 0.0
}

{'HasAns_exact': 67.29082321187585,
 'HasAns_f1': 77.65571459504568,
 'HasAns_total': 5928,
 'NoAns_exact': 4.087468460891506,
 'NoAns_f1': 4.087468460891506,
 'NoAns_total': 5945,
 'best_exact': 50.07159100480081,
 'best_exact_thresh': 0.0,
 'best_f1': 50.07159100480081,
 'best_f1_thresh': 0.0,
 'exact': 35.643897919649625,
 'f1': 40.81892328134685,
 'total': 11873}

It might be an not optimzed hyperparameters issue (see this: huggingface/transformers#822).

@andrelmfarias can you confirm the params you used during training? (https://github.com/cdqa-suite/cdQA/blob/sync-huggingface/examples/tutorial-train-xlnet-squad.py)

This issue is being discussed here: huggingface/transformers#947 (comment)