Update readme.md

readme.md

@@ -1,14 +1,16 @@
-Wraps OnTAD to work with the cooler ecosystem:
-https://github.com/mirnylab/cooler
+# OnTAD for coolers 
+cooler_ontad is a tool that wraps [OnTAD](https://github.com/anlin00007/OnTAD) to work with the [cooler ecosystem](
+https://github.com/mirnylab/cooler).
 
-OnTAD:
-https://github.com/anlin00007/OnTAD
+## Install with pip:
 
-Use our docker container:
-singularity run docker://gerlichlab/mmhic:release-1.1
-
-Run to see possible parameters:
+## Usage Examples:
 cooler_ontad --help
 Run example:
 cooler_ontad.py testdata/G2.fc_1_2.wOldG2.cis.1000.mcool
 
+## Dockerhub container:
+This can be found in our main container docker://gerlichlab/mmhic:release-1.0
+
+Run to see possible parameters:
+