update test_parse_metadata accordingly

catalystneuro · Jan 24, 2024 · 4012c1c · 4012c1c
1 parent 5f973f5
commit 4012c1c
Showing 1 changed file with 167 additions and 0 deletions.
diff --git a/tests/test_scanimage_utils.py b/tests/test_scanimage_utils.py
@@ -63,6 +63,106 @@ def test_parse_matlab_vector_invalid():
                 "num_planes": 20,
                 "frames_per_slice": 24,
                 "channel_names": ["Channel 1"],
+                "roi_metadata": {
+                    "imagingRoiGroup": {
+                        "ver": 1,
+                        "classname": "scanimage.mroi.RoiGroup",
+                        "name": "MROI Imaging ROI Group",
+                        "UserData": None,
+                        "roiUuid": "4118A30BD7393EFF",
+                        "roiUuiduint64": 4.690678283e18,
+                        "rois": [
+                            {
+                                "ver": 1,
+                                "classname": "scanimage.mroi.Roi",
+                                "name": "ROI 1",
+                                "UserData": None,
+                                "roiUuid": "8C08C657736FBC6C",
+                                "roiUuiduint64": 1.009053304e19,
+                                "zs": -11178.45,
+                                "scanfields": {
+                                    "ver": 1,
+                                    "classname": "scanimage.mroi.scanfield.fields.RotatedRectangle",
+                                    "name": "",
+                                    "UserData": None,
+                                    "roiUuid": "2B42EE3A0B039B9E",
+                                    "roiUuiduint64": 3.117315825e18,
+                                    "centerXY": [0.2141430948, -6.019800333],
+                                    "sizeXY": [3.616638935, 3.521464226],
+                                    "rotationDegrees": 0,
+                                    "enable": 1,
+                                    "pixelResolutionXY": [256, 256],
+                                    "pixelToRefTransform": [
+                                        [0.01412749584, 0, -1.601240121],
+                                        [0, 0.01375571963, -7.787410306],
+                                        [0, 0, 1],
+                                    ],
+                                    "affine": [
+                                        [3.616638935, 0, -1.594176373],
+                                        [0, 3.521464226, -7.780532446],
+                                        [0, 0, 1],
+                                    ],
+                                },
+                                "discretePlaneMode": 0,
+                                "powers": None,
+                                "pzAdjust": [],
+                                "Lzs": None,
+                                "interlaceDecimation": None,
+                                "interlaceOffset": None,
+                                "enable": 1,
+                            },
+                            {
+                                "ver": 1,
+                                "classname": "scanimage.mroi.Roi",
+                                "name": "ROI 2",
+                                "UserData": None,
+                                "roiUuid": "7C9E605DC6951B29",
+                                "roiUuiduint64": 8.979720663e18,
+                                "zs": -11178.45,
+                                "scanfields": {
+                                    "ver": 1,
+                                    "classname": "scanimage.mroi.scanfield.fields.RotatedRectangle",
+                                    "name": "",
+                                    "UserData": None,
+                                    "roiUuid": "A02889BA5E5501AB",
+                                    "roiUuiduint64": 1.154062548e19,
+                                    "centerXY": [2.664891847, 6.376705491],
+                                    "sizeXY": [3.616638935, 3.759400998],
+                                    "rotationDegrees": 0,
+                                    "enable": 1,
+                                    "pixelResolutionXY": [256, 256],
+                                    "pixelToRefTransform": [
+                                        [0.01412749584, 0, 0.8495086314],
+                                        [0, 0.01468516015, 4.489662412],
+                                        [0, 0, 1],
+                                    ],
+                                    "affine": [
+                                        [3.616638935, 0, 0.8565723794],
+                                        [0, 3.759400998, 4.497004992],
+                                        [0, 0, 1],
+                                    ],
+                                },
+                                "discretePlaneMode": 0,
+                                "powers": None,
+                                "pzAdjust": [],
+                                "Lzs": None,
+                                "interlaceDecimation": None,
+                                "interlaceOffset": None,
+                                "enable": 1,
+                            },
+                        ],
+                    },
+                    "photostimRoiGroups": None,
+                    "integrationRoiGroup": {
+                        "ver": 1,
+                        "classname": "scanimage.mroi.RoiGroup",
+                        "name": "",
+                        "UserData": None,
+                        "roiUuid": "1B4D989071535CF3",
+                        "roiUuiduint64": 1.967396358e18,
+                        "rois": {"_ArrayType_": "double", "_ArraySize_": [1, 0], "_ArrayData_": None},
+                    },
+                },
             },
         ),
         (
@@ -73,6 +173,73 @@ def test_parse_matlab_vector_invalid():
                 "num_planes": 2,
                 "frames_per_slice": 2,
                 "channel_names": ["Channel 1", "Channel 4"],
+                "roi_metadata": {
+                    "imagingRoiGroup": {
+                        "ver": 1,
+                        "classname": "scanimage.mroi.RoiGroup",
+                        "name": "Default Imaging ROI Group",
+                        "UserData": None,
+                        "roiUuid": "E9CD2A60E29A5EDE",
+                        "roiUuiduint64": 1.684716838e19,
+                        "rois": {
+                            "ver": 1,
+                            "classname": "scanimage.mroi.Roi",
+                            "name": "Default Imaging Roi",
+                            "UserData": {
+                                "imagingSystem": "Imaging_RGG",
+                                "fillFractionSpatial": 0.9,
+                                "forceSquarePixelation": 1,
+                                "forceSquarePixels": 1,
+                                "scanZoomFactor": 1,
+                                "scanAngleShiftFast": 0,
+                                "scanAngleMultiplierSlow": 1,
+                                "scanAngleShiftSlow": 0,
+                                "scanRotation": 0,
+                                "pixelsPerLine": 1024,
+                                "linesPerFrame": 1024,
+                            },
+                            "roiUuid": "1B54BED0B8A25D87",
+                            "roiUuiduint64": 1.969408741e18,
+                            "zs": 0,
+                            "scanfields": {
+                                "ver": 1,
+                                "classname": "scanimage.mroi.scanfield.fields.RotatedRectangle",
+                                "name": "Default Imaging Scanfield",
+                                "UserData": None,
+                                "roiUuid": "4309FD6B19453539",
+                                "roiUuiduint64": 4.830670712e18,
+                                "centerXY": [0, 0],
+                                "sizeXY": [18, 18],
+                                "rotationDegrees": 0,
+                                "enable": 1,
+                                "pixelResolutionXY": [1024, 1024],
+                                "pixelToRefTransform": [
+                                    [0.017578125, 0, -9.008789063],
+                                    [0, 0.017578125, -9.008789063],
+                                    [0, 0, 1],
+                                ],
+                                "affine": [[18, 0, -9], [0, 18, -9], [0, 0, 1]],
+                            },
+                            "discretePlaneMode": 0,
+                            "powers": None,
+                            "pzAdjust": [],
+                            "Lzs": None,
+                            "interlaceDecimation": None,
+                            "interlaceOffset": None,
+                            "enable": 1,
+                        },
+                    },
+                    "photostimRoiGroups": None,
+                    "integrationRoiGroup": {
+                        "ver": 1,
+                        "classname": "scanimage.mroi.RoiGroup",
+                        "name": "",
+                        "UserData": None,
+                        "roiUuid": "9FC266E57D28670D",
+                        "roiUuiduint64": 1.151187673e19,
+                        "rois": {"_ArrayType_": "double", "_ArraySize_": [1, 0], "_ArrayData_": None},
+                    },
+                },
             },
         ),
     ],