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Repack Nwb Files#1003

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pauladkisson wants to merge 37 commits intomaincatalystneuro/neuroconv:mainfrom repackcatalystneuro/neuroconv:repackCopy head branch name to clipboard

+1,548-25

Commits

Commits on Aug 12, 2024

• setup temp conversion script

  pauladkisson

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  7304229

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• added from_existing_neurodata_object for hdf5

  pauladkisson

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  4cc2a06

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• added get_existing_dataset_io_configurations

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Commits on Aug 13, 2024

• added support for chunk_shape=None

  pauladkisson

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  80c1fba

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• added from_existing_nwbfile to HDF5BackendConfiguration

  pauladkisson

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  7ee6fc6

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• added get_existing_backend_configuration

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  dacdeea

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• added repack_nwbfile

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  dae04bf

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Commits on Aug 14, 2024

• fixed bug with export options and hdmf.container.Container.set_data_io

  pauladkisson

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  4ac6e33

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• refactored from_ methods

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• template and changes optional

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Commits on Aug 15, 2024

• added image series test

  pauladkisson

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  d93a5c5

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• Merge branch 'main' into repack

  bendichter

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  ab8b22f

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• Merge branch 'main' into repack

  pauladkisson

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  934bb3a

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• added initial test

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  1ad69ca

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Commits on Aug 16, 2024

• updated signature to use file_path

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  04fb89c

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• added test for trials table (fails)

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  6dab477

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• moved backend_configuration_changes to top of the fn

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  e6d31a6

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• consolidated configure_and_export_nwbfile into configure_and_write_nwbfile

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• parameterized for use_default_backend_configuration

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Commits on Aug 19, 2024

• optional dci

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  80eb598

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• added test for backend config changes

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  433f8c9

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• updated api to use boolean use_default flag instead of mode=existing

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  dd906ac

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• added test for get_existing_backend_configuration

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  668cacc

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• removed image_series test

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  7796197

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• added compressed trials table column

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  b8a788c

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Commits on Aug 20, 2024

• added test for get_existing_dataset_io.py

  pauladkisson

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  f631fb4

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• Merge branch 'main' into repack

  pauladkisson

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  b089eb3

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• added docstrings

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  c464764

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• used BACKEND_NWB_IO dict

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  1cf3629

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• added ZarrDatsetIOConfiguration.from_neurodata_object

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  481529f

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• Merge branch 'main' into repack

  bendichter

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  1e6b119

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Commits on Aug 21, 2024

• removed unnecessary indent

  pauladkisson

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  9f02b61

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• estimate buffer shape

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  9ee146f

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• updated temp_test

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Commits on Aug 22, 2024

• added zarr to dataset_io tests

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  a2145a1

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• added zarr to backend_configuration tests

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  5785af0

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• added zarr to repack_nwbfile tests

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