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bam_access_get_avg_readlength_from_bam: doesn't filter out sec/supp reads #64

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keiranmraine opened this issue Mar 18, 2017 · 0 comments
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bam_access_get_avg_readlength_from_bam: doesn't filter out sec/supp reads #64

keiranmraine opened this issue Mar 18, 2017 · 0 comments

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@keiranmraine
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bam_access.c: bam_access_get_avg_readlength_from_bam

Reads from the cflag set 2816 may be hard clipped (don't think soft affects l_qseq). This is very likely at the very start of a file as these reads will be adjacent to the NNN block.
@ghost ghost closed this as completed in 4c7dded Mar 6, 2018
ghost pushed a commit that referenced this issue Mar 6, 2018
Merge pull request #72 from cancerit/feature/avg_rd_len_sec_supp_rds
b012f94 
Fixes #64
ghost pushed a commit that referenced this issue Mar 6, 2018
Merge tag '1.13.0' into dev
c926c22 
* Overlapping reads now handled #78
* Fixes for #64, #65, #61
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