Custom bins feature (rebased)

[dianab0]

Extended custom bins menu according to rfc https://docs.google.com/document/d/10za8fgTsXInjUCJltWzAW-HHRJnpLa3IAT17W8M5a9E/edit

Added Quartiles, Median split and Generate bins options, where Generate bins allows user to define bin size and min value.

Backend PR: cBioPortal/cbioportal#9198

Same as #4102 but from my own fork.

[pvannierop]

A very small code improvement. However, this branch needs to be merged after acceptance of PR cBioPortal/cbioportal#9198 since this branch will contain some API changes (need to run yarn updateAPI).

[pvannierop]

Thank you!

[adamabeshouse]

I'm surprised this wouldn't be observable

[pvannierop]

@adamabeshouse I have refactored the use of the store for the CustomBinsModal. Now the fields are observable. You can find the changes in the last commit.

[adamabeshouse]

looks good, thanks for making all the requested changes

[alisman]

@pvannierop i'm getting a 500 error when i select quartlies here:

https://www.cbioportal.org/study/summary?id=msk_impact_2017

I tried this with both my latest commit and also commit from prior to the changes i made.

curl 'https://www.cbioportal.org/api/clinical-data-bin-counts/fetch?dataBinMethod=STATIC'
-H 'authority: www.cbioportal.org'
-H 'accept: application/json'
-H 'accept-language: en-US,en;q=0.9'
-H 'content-type: application/json'
-H 'cookie: _ga=GA1.2.1629202144.1632427001; _ga_0JZ9C3M56S=GS1.1.1642187102.15.0.1642187102.0; _gid=GA1.2.1585942200.1651518115; amplitude_id_fef1e872c952688acd962d30aa545b9ecbioportal.org=eyJkZXZpY2VJZCI6IjljY2MxYTI5LTkzMGMtNDliNS1hMWJjLWVlMGNhYTQ1NGMwMFIiLCJ1c2VySWQiOm51bGwsIm9wdE91dCI6ZmFsc2UsInNlc3Npb25JZCI6MTY1MTY4NTA2NjYyNiwibGFzdEV2ZW50VGltZSI6MTY1MTY4NjE4NDI4MSwiZXZlbnRJZCI6MTcxLCJpZGVudGlmeUlkIjoxMywic2VxdWVuY2VOdW1iZXIiOjE4NH0=; JSESSIONID=9E2B9A442DF194D25299BEC5D7BAB69F; _gat=1'
-H 'origin: https://www.cbioportal.org'
-H 'referer: https://www.cbioportal.org/study/summary?id=msk_impact_2017'
-H 'sec-ch-ua: " Not A;Brand";v="99", "Chromium";v="101", "Google Chrome";v="101"'
-H 'sec-ch-ua-mobile: ?0'
-H 'sec-ch-ua-platform: "macOS"'
-H 'sec-fetch-dest: empty'
-H 'sec-fetch-mode: cors'
-H 'sec-fetch-site: same-origin'
-H 'user-agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/101.0.4951.54 Safari/537.36'
-H 'x-current-url: https://www.cbioportal.org/study/summary?id=msk_impact_2017'
--data-raw '{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":true,"binMethod":"QUARTILE","binsGeneratorConfig":{"binSize":0,"anchorValue":0}}],"studyViewFilter":{"studyIds":["msk_impact_2017"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}}'
--compressed