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Query component#107

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adufilie wants to merge 133 commits intocBioPortal:integrationcBioPortal/cbioportal-frontend:integrationfrom adufilie:homepageadufilie/cbioportal-frontend:homepageCopy head branch name to clipboard

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Commits on Apr 24, 2017

• squashed commits for Cancer study selector

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• squashed commits for styling changes

  

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  edbbe01

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• fix styling errors (overflow)

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• move computed stuff to QueryStore and add devMode components

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• Use MobxPromise

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• update genetic profile selector to use mobx

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• no longer need @computed getter to use MobxPromise

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• Fix key warning in render

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• Fix key warning in StudyList

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• Add "Show work in progress" checkbox

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• Clean up profile selector and dev controls

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• overflow

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• minor changes

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• refactoring more code to use mobx

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• fix compile errors

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• Show all selected studies

  

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  5a151a0

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• Add two new components and clean up code

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• fix binding issue

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• fix selected logic bug

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  c5b40d0

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• fix logic issue

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  bae6f27

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• fix logic bugs

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• fix radio button bugs

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• fix styling issues, add gene set selector

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• styling

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• cancer types w/ selected studies now appear bold

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• add funcitonality to SampleListSelector and GeneSetSelector

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• sorting sample lists

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• interface for custom case ids

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• Using new SampleList.sampleCount field

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• implement priority studies

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• Add default selection logic for genetic profiles and sample list, add mutsig/gistic button show/hide logic

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• Make genetic profile selector match existing behavior

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• preliminary work for gene validation

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• added gene validation, sans gui

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• Update selected category indicator

  

  brittanydionigi

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• use async/await

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• added gene validation buttons

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• small changes

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• fixed some styling issues

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• added empty popups for mutsig/gistic gene selection

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• Improve gene validation behavior (debounced)

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• documentation

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• improved concurrency inside gene suggestion code

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• Styling overrides

  

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• Fix input margins

  

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• Label display override

  

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• Update max tree depth to 3

  

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• Reduce max-width for study names

  

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• MutSigGeneSelector progress

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• move devMode controls from QueryContainer to HomePage

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• Use new reactable typings

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• Gistic popup selection functionality and styling fixes

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• improved feedback for pending data

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• showPagination: true

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• Replace relative ../node_modules imports

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• Code cleanup

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• mutsig popup header checkbox

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• linting

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• Finishing touches on mutsig/gistic popups

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• Fix react-fontawesome issue

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• Fix initial sort in gistic popup

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• New locations of generated API files

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• using mobxpromise npm module

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• use AppConfig

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• Revert "using mobxpromise npm module"

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• draggable popups

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• Remove old code

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• Revert unnecessary changes

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• adjust css references

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• Move global styles to scss module

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  4cefa43

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• typing for react-select and styling changes

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  0478752

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• fixed gene list selection bug

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  c07c3ad

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• code cleanup

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• simplifying code

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• add download tab

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  b3ea7f4

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• update to use urls.ts

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• stuf

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• Fix max-widths on labels

  

  brittanydionigi

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  4c45793

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• Fix label alignments

  

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• Update button styles

  

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  4cb3e4b

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• oql syntax error highlight works now

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  00f3d0e

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• fix bug in oql syntax error highlighting

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• Progress on submit button

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• fix errors in generating url

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• Use React context instead of static instance of QueryStore

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  76a5d1f

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• linting

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• slight adjustment for height of cancer study selector

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• Add lint-fix npm script

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  c9cbed8

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• Minor changes. Genome Space button callback added.

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• Hide GenomeSpace button

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• query params loading from url and saving in history

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• Various changes

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• Disable cancer type checkbox in download tab

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  505d037

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• Fix typescript error

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  4f7f7f7

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• fixed bug w/ custom case set

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• Update h2s

  

  brittanydionigi

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• Fix left margin on labels

  

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• Buttons & Popups

  

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• Add red/green colors

  

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• Select controls

  

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• custom case set now works w/ patient ids

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• Re-add borders

  

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• Minor styling fixes

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• Tooltips and "Deselect all"

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• Using react-bootsrap Modal instead of PopupWindow/react-draggable

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• Fix bug where "Selected Studies" overlay was affected by search text

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• Improved error display

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• Custom case set validation & submit button disabling

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• Upgrade mobxpromise

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• Use @types/classnames

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• Remove unused files

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• Add hack to contend with mobx-react-router changes

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• Selected Studies view no longer shows priority studies (duplicates)

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• Fix font sizes

  

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• Fix margins paddings and height

  

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• Fix colors and line heights

  

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• Update tabs

  

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• Update buttons

  

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• SectionHeader displays busy status and errors

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• Added error msg and removed duplicate styling for h2

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• Fix case set dropdown tooltip positioning

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• Refactored StudyListLogic to fix obscure filtering bugs and ported old text query code

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• Enable submit button when OQL error present

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• Add back enhancedReactTable

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• Fix gene validation upper/lower case issue

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• Fix .cta global style selector

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  6d8bdb2

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• Clean up homepage scss

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• Background and borders

  

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• Containers

  

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• Consistent error styling and margins

  

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  3a4e77a

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• Remove temporary hacks

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• Fix performance issue in cancer study selector

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• Move selected studies view to modal dialog

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