Adding base level comparison modes for CompareReferences tool #7987

Merged

droazen merged 13 commits intomasterfrom oc_comparereferenceswithaligner

Aug 27, 2022

+5,903-20

Commits on Jul 29, 2022

code to generate fasta files for individual sequences
orlicohen
committed
code to check argument and generate sequence fastas for mismatching sequences
orlicohen
committed

Commits on Aug 1, 2022

Commits on Aug 3, 2022

factored out base comparison code, added exception when attempting to do base comparison on >2 references
orlicohen
committed

Commits on Aug 4, 2022

Commits on Aug 5, 2022

mummer execution and executable files
orlicohen
committed

Commits on Aug 8, 2022

Commits on Aug 11, 2022

cleaning up, base level modes done, fixing integration and unit test -- need intel build
orlicohen
committed

Commits on Aug 12, 2022

responding to review comments
orlicohen
committed

Commits on Aug 27, 2022

Added MUMmer distributions for Intel Macs and Intel Linux, and code to select the right distribution
droazen
committed