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asmirnov239 committed Feb 6, 2023
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* 5k intervals, approximately 16GB of memory should be enough to optimize memory usage; for the same
* analysis at 12.5k intervals, we recommend 32GB of memory. Runtimes are on the order of a few hours.</p>
*
* <p>Note that {@link GermlineCNVCaller} can be run on larger interval sets by scattering them into smaller shards.
* <p>Note that {@link GermlineCNVCaller} can be run on larger interval sets by scattering them into smaller "shards."
* The shards can subsequently be merged together by {@link PostprocessGermlineCNVCalls} tool. In cloud
* and HPC environments, the tool can then process each shard in parallel within a single job.</p>
*
* <p>By default, {@link GermlineCNVCaller} will attempt to use all CPU cores accessible to it within the runtime
* environment. Two environment variables <code>MKL_NUM_THREADS</code> and <code>OMP_NUM_THREADS</code> control the
* environment. Two environment variables - <code>MKL_NUM_THREADS</code> and <code>OMP_NUM_THREADS</code> - control the
* parallelism of the underlying linear algebra libraries.</p>
*
* <p>Runtime is also affected by how fast the inference procedure converges. There are multiple tool arguments that can
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