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Build and Test GATK 4

refactoring some stuff for clarity #3479

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refactoring some stuff for clarity

refactoring some stuff for clarity #3479

Triggered via pull request December 6, 2023 21:55
@lbergelsonlbergelson
synchronize #8598
lb_refactor_ricky_stuff
Status Failure
Total duration 52m 54s
Artifacts 6

gatk-tests.yml

on: pull_request
check if the environment has privileges
0s
check if the environment has privileges
build and push gatk docker to artifacts
22m 42s
build and push gatk docker to artifacts
Validate script WDLs using womtools
54s
Validate script WDLs using womtools
Validate generated WDLs using womtools
13m 22s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
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14 errors and 2 warnings
Java 17.0.6+10 build and test cloud
Process completed with exit code 1.
Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
WDL test RUN_CNN_WDL on cromwell
Process completed with exit code 1.
Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 build and test integration
Process completed with exit code 1.
Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 build and test integration
Process completed with exit code 1.
Java 17.0.6+10 test on docker unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker variantcalling
Process completed with exit code 1.
Java 17.0.6+10 test on docker variantcalling
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker conda
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker integration
Process completed with exit code 1.
Java 17.0.6+10 test on docker integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker integration
Process completed with exit code 1.
Java 17.0.6+10 build and test integration
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
Java 17.0.6+10 test on docker integration
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
gatkDockerImage Expired
2.11 GB
test-results-17.0.6+10-cloud Expired
301 KB
test-results-17.0.6+10-unit Expired
156 MB
test-results-docker-17.0.6+10-conda Expired
282 KB
test-results-docker-17.0.6+10-unit Expired
154 MB
test-results-docker-17.0.6+10-variantcalling Expired
849 KB