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Remove data loading code #420

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merged 2 commits into from
May 15, 2024
Merged

Remove data loading code #420

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765d9da
Remove data loading code
adamltyson May 13, 2024
4c93d7e
update pinned version of brainglobe-utils
adamltyson May 13, 2024
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82 changes: 0 additions & 82 deletions cellfinder/core/tools/IO.py
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2 changes: 1 addition & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@ classifiers = [
]
requires-python = ">=3.9"
dependencies = [
"brainglobe-utils>=0.4.3",
"brainglobe-utils>=0.5.0",
"brainglobe-napari-io>=0.3.4",
"dask[array]",
"fancylog>=0.0.7",
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2 changes: 1 addition & 1 deletion tests/core/test_integration/test_detection.py
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Original file line number Diff line number Diff line change
Expand Up @@ -5,9 +5,9 @@
import numpy as np
import pytest
from brainglobe_utils.general.system import get_num_processes
from brainglobe_utils.IO.image.load import read_with_dask

from cellfinder.core.main import main
from cellfinder.core.tools.IO import read_with_dask

data_dir = os.path.join(
os.getcwd(), "tests", "data", "integration", "detection"
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2 changes: 1 addition & 1 deletion tests/core/test_integration/test_detection_structure_splitting.py
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Original file line number Diff line number Diff line change
Expand Up @@ -9,9 +9,9 @@
import os

import pytest
from brainglobe_utils.IO.image.load import read_with_dask

from cellfinder.core.main import main
from cellfinder.core.tools.IO import read_with_dask

data_dir = os.path.join(
os.getcwd(), "tests", "data", "integration", "detection"
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18 changes: 0 additions & 18 deletions tests/core/test_unit/test_tools/test_IO.py
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